Table 1 Sample of the pathways and processes with significant enrichment of DE genes, partitioned for up and downregulated genes in stress

From: Divergence in the transcriptional landscape between low temperature and freeze shock in cultivated grapevine (Vitis vinifera)

Pathway or process

Acclimation

Freeze

Acclimation freeze

 

Down

Up

Down

Up

Down

Up

1. Metabolism

11

11

9

29

17

13

1.1 Carbohydrate metabolism

2

2

1

6

2

2

1.3 Lipid metabolism

0

4

2

4

3

2

1.5 Amino acid metabolism

1

3

1

7

1

4

1.9 Biosynthesis of secondary metabolites

5

1

0

7

2

4

2. Transcription

2

2

2

0

2

0

3. Environmental processing

4

3

2

4

3

5

3.2 Hormone signaling

3

2

2

2

3

3

4. Cellular processes

3

1

2

0

3

0

5. Transport

2

4

3

5

4

3

6. Transcription factors

12

8

15

15

11

18

  1. Pathways and processes follow VitisNet designations. Numbers in columns indicate the number of pathways within the classification that were identified as enriched.
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