Table 1 Portion of upregulated stress-related genes involved in oxidoreductase, oxidation–reduction, single-organism metabolism and biological processes and the response to stress in response to B. dothidea

From: Activation of disease resistance against Botryosphaeria dothidea by downregulating the expression of MdSYP121 in apple

Gene ID

Annotation

RNAi mock vs Vec mock (log2 fold-change)

pv

RNAi inocation vs Vec inocation (log2 fold-change)

pv

Oxidoreductase activity

MDP0000735747

Gibberellin 2-beta-dioxygenase 2

1.5984

4.49E−14

1.6161

6.00E−09

MDP0000136847

(R)-mandelonitrile lyase 2

1.4548

2.48E−05

2.2236

3.58E−79

MDP0000158739

Cytochrome P450

2.4089

2.36E−24

3.4183

6.91E−129

MDP0000742438

Ferric reduction oxidase 4

2.2491

4.77E−67

2.3085

9.05E−90

MDP0000570102

Protein SRG1

1.7835

3.81E−62

1.8106

1.22E−78

MDP0000611163

Peroxidase

2.3526

8.70E−16

MDP0000925883

UDP-glucuronic acid decarboxylase 5

1.4681

3.87E−19

1.694

7.17E−29

MDP0000451182

Peroxidase 66

4.8509

1.20E−08

MDP0000251295

1-aminocyclopropane-1-carboxylate oxidase

1.652

3.36E−24

MDP0000234983

Cytokinin dehydrogenase 5

1.6208

0.00037497

MDP0000442206

Glutamate synthase [NADH]

2.3915

1.18E−51

MDP0000306998

Tropinone reductase

1.0335

1.95E−05

Oxidation–reduction process

MDP0000509613

NAD(P)H dehydrogenase

1.2347

4.67E−33

1.6215

0

MDP0000255970

Transcription factor DIVARICATA

1.0258

0.0011272

1.1359

0.00014298

MDP0000555589

Polyphenol oxidase

4.0991

8.44E−38

4.0455

1.55E−40

MDP0000286750

Ferritin-3, chloroplastic

4.2438

0.00059104

MDP0000807470

Sorbitol dehydrogenase

1.0825

5.59E−07

MDP0000312559

Probable nucleoredoxin 2

2.3805

0.00037441

MDP0000906067

Photosystem II repair protein

2.51

3.21E−09

MDP0000735022

Beta-glucosidase 24

1.8177

6.52E−12

MDP0000130200

Primary amine oxidase

1.5744

4.77E−05

Single-organism metabolic process

MDP0000287919

4-hydroxycoumarin synthase 1

2.105

1.73E−16

2.5539

0

MDP0000257119

4-hydroxycoumarin synthase 2

3.8812

0.00059684

MDP0000180326

Methionine gamma-lyase

4.8137

5.89E−10

5.1866

2.42E−28

MDP0000266097

Dephospho-CoA kinase

1.0462

4.42E−37

1.3943

3.29E−120

MDP0000289339

Cellulose synthase-like protein

1.9853

1.93E−128

2.21

9.22E−192

MDP0000180890

Probable aminotransferase

2.3741

4.80E−05

4.265

2.66E−19

MDP0000319502

Bark storage protein

1.1989

1.68E−12

MDP0000239026

Ocs element-binding factor 1

1.8719

1.25E−06

MDP0000219975

Acetyl-CoA carboxylase 1

1.9818

2.98E−35

MDP0000133520

Patatin-like protein 2

1.9469

3.35E−18

MDP0000137919

CTP synthase

2.7395

3.58E−06

MDP0000135529

Alpha-amylase

2.654

7.22E−05

Biological process

MDP0000280265

Acidic endochitinase

1.4679

1.3334E−38

1.9457

0

MDP0000390049

Tryptophan aminotransferase-related protein 4

1.4662

1.2133E−47

1.7021

2.72E−245

MDP0000199977

SPX domain-containing membrane protein

1.2495

0.0049554

1.5426

2.9762E−07

MDP0000287302

Thaumatin-like protein

1.2316

2.79E−150

1.6295

0

MDP0000180890

Probable aminotransferase

2.3741

4.7997E−05

4.265

2.657E−19

MDP0000321210

50S ribosomal protein L18

1.8452

2.2985E−05

2.564

1.4141E−08

MDP0000126058

Rhodanese-like domain-containing protein 4

1.1419

3.6208E−08

1.3563

3.8163E−11

MDP0000179851

Caffeic acid 3-O-methyltransferase 1

1.7312

0.00075589

MDP0000230504

Probable aldo-keto reductase 1

1.068

2.7665E−11

MDP0000321125

Late embryogenesis abundant protein 2

5.3001

0.0032804

MDP0000805281

Cyanogenic beta-glucosidase

2.5017

1.287E−191

MDP0000490846

Uncharacterised protein Mb2734

1.0332

8.7225E−06

MDP0000937817

Calcineurin B-like protein 4

1.0809

4.7002E−06

MDP0000128326

Ethylene-responsive transcription factor

3.1451

0.0022472

Response to stress

MDP0000782085

Pathogenesis-related protein

1.1335

2.169E−177

1.1759

0

MDP0000642609

Universal stress protein (USP) family protein

2.3681

1.8358E−20

2.8868

1.7317E−89

MDP0000846849

Glu S.griseus protease inhibitor

2.5176

8.5997E−37

2.8343

0

MDP0000471879

Proteinase inhibitor

1.2793

6.0407E−09

2.0045

3.522E−151

MDP0000313454

Major allergen Pru ar 1

4.8158

0.00032033

5.4776

5.4005E−16

MDP0000265782

Heat shock protein 90

1.0131

7.2559E−07

MDP0000327191

Glucan endo-1,3-beta-glucosidase

4.417

0.0013841

MDP0000868045

Dehydrin DHN1

1.6711

5.857E−301

  1. P-values for each enriched class are indicated (pv)