Table 1 List of different expression genes (DEGs) between WT and #11 tomato fruits at the MG and BR + 0 stages. Genes marked with asterisks were validated by qPCR

From: SlMYB75, an MYB-type transcription factor, promotes anthocyanin accumulation and enhances volatile aroma production in tomato fruits

ITAG 2.40 Tomato

Log2-fold (#11/WT; MG)

Log2-fold (#11/WT; BR + 0)

Functional annotation

Phenylalanine pathway

  Solyc10g086180.2

1.66

1.07

Phenylalanine ammonia-lyase

  Solyc00g282510.2*

1.68

1.03

Phenylalanine ammonia-lyase-like

  Solyc05g052240.3

1.34

1.71

Probable chalcone-flavonone isomerase 3

  Solyc08g080040.3*

1.51

1.68

Leucoanthocyanidin dioxygenase-like

  Solyc09g091510.3*

1.87

1.60

Chalcone synthase 1

  Solyc12g088170.2

8.96

10.01

Anthocyanin acyltransferase

  Solyc10g083440.1*

1.85

1.46

Anthocyanidin 3-O-glucosyltransferase-like

Flavor related

  Solyc01g006540.3*

2.86

1.19

LOXC

  Solyc01g099190.3*

2.49

1.46

LOXB

  Solyc01g006560.3

2.25

1.38

LOXF

  Solyc08g006740.3

2.00

1.71

AADC2

  Solyc01g108560.4*

1.03

2.16

CXE1

  Solyc06g060180.2*

4.40

1.90

TPS

  Solyc10g011920.2

1.10

1.66

Aromatic amino acid lyase

Ripening related pathway

  Solyc01g095080.3*

2.20

1.94

ACS2

 Solyc05g050010.3*

1.80

1.98

ACS4

  Solyc03g111720.3*

1.91

3.69

E4

  Solyc09g089580.3*

1.74

1.50

E8

  Solyc09g075440.3

1.23

1.76

ETR3(NR)

  Solyc05g012020.3*

3.09

1.68

RIN

  Solyc03g044300.3

2.39

1.40

AP2a

  Solyc03g031860.3

2.60

1.71

PSY1

  Solyc10g080210.2

2.54

2.33

PG2a

Other genes

  Solyc09g065100.2*

0.62

1.34

bHLH150

  Solyc12g007070.2

2.62

1.28

Heat stress transcription factor C-1

  Solyc11g017470.2*

2.39

1.02

NAC domain-containing protein 2-like

  Solyc10g079050.2

1.46

1.71

Transcription factor bHLH130-like

  Solyc10g009550.3

−2.50

−1.06

Probable WRKY transcription factor 30

  Solyc09g014990.3

−1.93

−1.18

Probable WRKY transcription factor 26

  Solyc06g051260.3*

−1.46

−1.25

Transcription factor bHLH51

  Solyc03g115850.3

−0.99

−1.63

NAC domain-containing protein 100

  Solyc10g080030.2

−1.89

−1.69

MADS-box transcription factor 23-like

  Solyc12g014140.2

−1.93

−1.81

TCP transcription factor 3

  Solyc11g028020.2

−1.35

−2.09

TAGL11 transcription factor

  Solyc10g005010.3

−2.31

−3.38

NAC domain-containing protein 43

  Solyc08g080490.3

−1.52

−1.53

2S sulfur-rich seed storage protein 2-like

  Solyc09g025210.3

−1.68

−2.32

12S seed storage protein CRA1-like

  Solyc09g072560.3

−1.68

−2.55

11S globulin seed storage protein 2-like

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