Fig. 6: Circos plot of quantitative trait loci (QTLs) for various phenotypes in field and bioassay, as well as RNA-seq data associated with Psa-resistant and susceptible genotypes, anchored on the chromosomes of the Red5 genome version 1.69.0. | Horticulture Research

Fig. 6: Circos plot of quantitative trait loci (QTLs) for various phenotypes in field and bioassay, as well as RNA-seq data associated with Psa-resistant and susceptible genotypes, anchored on the chromosomes of the Red5 genome version 1.69.0.

From: Multiple quantitative trait loci contribute to resistance to bacterial canker incited by Pseudomonas syringae pv. actinidiae in kiwifruit (Actinidia chinensis)

Fig. 6

Tracks A and B represent differentially expressed genes (DEGs) with logFC ± 2 and above in fully resistant (Psa-FR) vs. susceptible (Psa-Sus) and resistant to medium resistant (Psa-RMR) vs. Psa-Sus genotypes, respectively. On track A, blue circles are upregulated and red circles are downregulated genes in Psa-FR compared with Psa-Sus genotypes. On track B, blue circles are upregulated and red circles are downregulated genes in Psa-Sus compared with Psa-RMR genotypes. Genes with logFC, between 1 and −1, are represented by green circles. Increase in circle diameter indicates increasing logFC value. Track C represents DEGs common to Psa-FR and Psa-RMR. Track D and E are LOD values for Psa_score_Field for ‘Hort16A’ and P1, respectively. The lines change from black to red for a LOD score > 3. Track F and G are QTLs detected from all phenotypes listed in QTL key in ‘Hort16A’ and P1, respectively. H represents the lines connecting QTLs for similar phenotype on different chromosomes

Back to article page