Table 3 Significant marker signals across models and associated minor allele counts compared across segments (mean standard error in parenthesis).

From: Minor alleles are associated with white rust (Albugo occidentalis) susceptibility in spinach (Spinacia oleracea)

 

GWA

GAF

Basic allelic association compared between corresponding 25% tail segments

Basic allelic association compared between corresponding interquartile segments

Chr

#Mk

#Mk

#Mk

MR (Q1)

MS (Q4)

OR

#Mk

Q2

Q3

OR

Chr1

28

59

60

0.119 (0.03)

0.249 (0.07)

3.36 (0.41)

8

0.215 (0.07)

0.269 (0.27)

1.54 (0.42)

Chr2

26

68

95

0.173 (0.02)

0.251 (0.08)

2.83 (0.38)

15

0.133 (0.08)

0.262 (0.04)

3.52 (0.47)

Chr3

38

53

102

0.111 (0.08)

0.186 (0.04)

3.81 (0.48)

6

0.113 (0.02)

0.205 (0.05)

1.00 (0.45)

Chr4

28

78

80

0.178 (0.02)

0.249 (0.01)

3.11 (0.41)

24

0.23 (0.00)

0.240 (0.05)

1.83 (0.41)

Chr5

27

36

62

0.111 (0.09)

0.224 (0.51)

9.52 (0.39)

6

0.088 (0.02)

0.049 (0.08)

3.42 (0.82)

Chr6

23

46

49

0.250 (0.01)

0.246 (0.08)

9.88 (0.40)

2

0.209 (0.04)

0.172 (0.08)

3.76 (0.53)

aNumber of associated alleles

na

na

na

72

376

na

na

27

34

na

% of associated alleles

na

na

na

14

86

na

na

44

56

na

Totals

170

342

448

na

na

na

61

na

na

na

  1. na not-available, #Mk number of markers, Chr chromosome, GWA genome-wide association model, GAF basic genotypic association test, Q quartile, OR odds ratio
  2. aAlleles in the Q1–Q4 segments