Table 1 Statistics of different assemblies and BUSCO analysis results for the sweet cherry cv. Tieton genome

From: Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing

Assembly

Number of contigs

Contig N50 (kb)

Longest contig (kb)

Total contig length (Mb)

BUSCO analysis results

C

S

D

F

M

MaSuRCA (Flye)

2773

244.00

3148.23

322.30

98.1%

84.4%

13.7%

0.4%

1.5%

MaSuRCA (CABO)

1550

855.32

5752.65

336.99

98.0%

82.4%

15.6%

0.2%

1.8%

Canu

1863

715.83

10,366.47

409.75

67.2%

56.1%

11.1%

16.9%

15.9%

Canu-medaka-NextPolish

2013

737.80

10,558.92

417.34

98.0%

70.4%

27.6%

0.4%

1.6%

Canu-medaka-NextPolish- Purge_Haplotigs

462

1596.71

10,558.92

271.25

96.6%

91.6%

5.0%

1.1%,

2.3%

wtdbg2

9839

128.10

8345.69

467.82

88.0%

85.7%

2.3%

5.1%

6.9%

wtdbg2-medaka-NextPolish

7589

171.84

8398.19

409.70

98.0%

70.4%

27.6%

0.4%

1.6%

wtdbg2-medaka-NextPolish- Purge_Haplotigs

2959

402.20

8398.19

297.32

95.9%

92.3%

3.6%

0.7%

3.4%

NECAT

1417

2205.17

13,496.20

416.95

79.4%

69.7%

9.7%

11.2%

9.4%

NECAT-medaka-NextPolish

1390

2201.74

13,600.65

418.80

97.9%

83.9%

14.0%

0.3%

1.8%

NECAT-medaka-NextPolish- Purge_Haplotigs

610

3247.20

13,603.98

344.29

97.4%

91.2%

6.2%

0.5%

2.1%

  1. For the BUSCO analysis results, complete BUSCOs (C), complete and single-copy BUSCOs (S), complete and duplicated BUSCOs (D), fragmented BUSCOs (F), and missing BUSCOs (M). MaSuRCA (Flye): MaSuRCA was used to generate the conscience super reads, and Flye was used to assemble the genome. MaSuRCA (CABO): MaSuRCA was used to generate the conscience super reads, and CABO was used to assemble the genome
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