Table 4 Statistics of sequencing and mapping of the four S. pimpinellifolium and four S. lycopersicum var. cerasiforme accessions re-sequenced using Heinz 1706 SL4.0 as a reference genome26 (RF).
S. pimpinellifolium | S. lycopersicum var. cerasiforme | Mean | Total | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
SP1 | SP2 | SP3 | SP4 | SLC1 | SLC2 | SLC3 | SLC4 | |||
Raw reads (million) | 122.7 | 105.4 | 108.3 | 105.1 | 124.0 | 112.1 | 119.8 | 116.9 | 114.2 | 914.3 |
Yield (Gb) | 18.5 | 15.9 | 16.3 | 15.8 | 18.7 | 16.9 | 18.0 | 17.6 | 17.2 | 137.7 |
High-quality reads (million) | 122.3 | 105.3 | 108.3 | 105.0 | 123.9 | 112.1 | 119.7 | 116.8 | 114.1 | 913.4 |
Total nt. (billion) | 18 | 16 | 16 | 16 | 19 | 17 | 17.9 | 17 | 17.0 | 136.4 |
Reads mapped (million) | 116 | 100 | 102 | 101 | 120 | 110 | 116 | 114 | 109.8 | 879.1 |
% reads mapped | 94.4 | 95.1 | 94.3 | 95.9 | 96.7 | 97.3 | 97.1 | 97.3 | 96.0 | – |
Average depth of coverage | 20.2 | 17.1 | 18.0 | 17.0 | 21.0 | 18.5 | 19.0 | 19.4 | 18.7 | – |
% average coverage RF | 96.8 | 96.8 | 95.5 | 97.0 | 98.1 | 98.7 | 98.7 | 98.2 | 97.4 | – |
