Table 2 CRG expansion analysis for each polyploidization event in selected species
Species | Event 1 | Event 2 | Event 3 | Event 4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Num# | Per (%) | Events | Num# | Per (%) | Events | Num # | Per (%) | Events | Num # | Per (%) | Events | |
G. max | 480 | 59.04 | WGT (γ) | 575 | 70.73 | WGD (β) | 508 | 62.48 | WGD (θ) | NA | NA | NA |
A. thaliana | 132 | 31.43 | WGT (γ) | 229 | 54.52 | WGD (β) | 228 | 54.29 | WGD (α) | NA | NA | NA |
B. napus A | 162 | 21.60 | WGT (γ) | 283 | 37.73 | WGD (β) | 332 | 44.27 | WGD (α) | 567 | 75.60 | WGT (θ) |
B. napus C | 78 | 10.13 | WGT (γ) | 220 | 28.57 | WGD (β) | 285 | 37.01 | WGD (α) | 533 | 69.22 | WGT (θ) |
B. oleracea | 310 | 36.38 | WGT (γ) | 361 | 42.37 | WGD (β) | 393 | 46.13 | WGD (α) | 751 | 88.15 | WGT (θ) |
B. rapa | 306 | 40.80 | WGT (γ) | 417 | 55.60 | WGD (β) | 430 | 57.33 | WGD (α) | 653 | 87.07 | WGT (θ) |
G. hirsutum A | 305 | 51.35 | WGT (γ) | 491 | 82.66 | Decaploid (θ) | NA | NA | NA | NA | NA | NA |
G. hirsutum D | 356 | 57.79 | WGT (γ) | 530 | 86.04 | Decaploid (θ) | NA | NA | NA | NA | NA | NA |
G. arboreum | 111 | 18.50 | WGT (γ) | 398 | 66.33 | Decaploid (θ) | NA | NA | NA | NA | NA | NA |
G. raimondii | 364 | 58.90 | WGT (γ) | 478 | 77.35 | Decaploid (θ) | NA | NA | NA | NA | NA | NA |
P. trichocarpa | 397 | 79.08 | WGT (γ) | 452 | 90.04 | WGD (θ) | NA | NA | NA | NA | NA | NA |
V. vinifera | 176 | 55.70 | WGT (γ) | NA | NA | NA | NA | NA | NA | NA | NA | NA |
S. lycopersicum | 287 | 71.75 | WGT (γ) | 326 | 81.50 | WGT (θ) | NA | NA | NA | NA | NA | NA |
Z. mays | 169 | 30.18 | WGD (τ) | 91 | 16.25 | WGD (σ) | 366 | 65.36 | WGD (ρ) | 399 | 71.25 | WGD (θ) |
O. sativa | 176 | 40.93 | WGD (τ) | 124 | 28.84 | WGD (σ) | 256 | 59.53 | WGD (ρ) | NA | NA | NA |
A. comosus | 199 | 69.82 | WGD (τ) | 213 | 74.74 | WGD (σ) | NA | NA | NA | NA | NA | NA |
E. guineensis | 186 | 63.70 | WGD (τ) | 196 | 67.12 | WGD (θ) | NA | NA | NA | NA | NA | NA |
