Table 1 Summary of the candidate-associated regions

From: A 14 nucleotide deletion mutation in the coding region of the PpBBX24 gene is associated with the red skin of “Zaosu Red” pear (Pyrus pyrifolia White Pear Group): a deletion in the PpBBX24 gene is associated with the red skin of pear

Method

Variant type

Chromosome ID

Start (bp)

End (bp)

Size (Mb)

Gene number

ED

SNP

Chr 4

7,410,000

7,490,000

0.08

5

  

Chr 4

8,080,000

8,780,000

0.7

57

  

Chr 4

8,840,000

22,590,000

13.75

1097

 

InDel

Chr 4

7,450,000

22,580,000

15.13

1211

SNP index

SNP

Chr 4

60,000

90,000

0.03

6

  

Chr 4

6,480,000

6,520,000

0.04

4

  

Chr 4

6,720,000

6,730,000

0.01

1

  

Chr 4

6,850,000

6,910,000

0.06

4

  

Chr 4

6,930,000

11,000,000

4.07

310

 

InDel

Chr 4

1

170,000

0.17

14

  

Chr 4

10,070,000

10,100,000

0.03

1

  

Chr 4

10,310,000

10,380,000

0.07

5

  

Chr 4

10,470,000

10,470,000

0

1

  

Chr 4

10,490,000

10,990,000

0.5

30

  

Chr 4

7,060,000

7,140,000

0.08

6

  

Chr 4

7,240,000

7,250,000

0.01

2

  

Chr 4

7,300,000

9,390,000

2.09

163

  

Chr 4

9,430,000

9,440,000

0.01

1

  

Chr 4

9,490,000

9,500,000

0.01

1

  

Chr 4

9,560,000

10,000,000

0.44

29

  

Chr 11

1,240,000

1,260,000

0.02

4

  

Chr 11

520,000

1,220,000

0.7

102