Fig. 4: Analysis of the collinear region between the S loci of Rosa (rose) and Prunus (almond) and F. vesca. | Horticulture Research

Fig. 4: Analysis of the collinear region between the S loci of Rosa (rose) and Prunus (almond) and F. vesca.

From: Molecular characteristics of S-RNase alleles as the determinant of self-incompatibility in the style of Fragaria viridis

Fig. 4

Fve_v4_6 represents chromosome 6 of F. vesca, and its enlarged region represents the area that is highly collinear with the S loci of the two rose genomes (Rosa_v1_3, from 38160380 to 43142292, and Rosa_v2_3, from 3037968 to 7988569) and the almond genome (Prunus_v2_6, from 24640828 to 29556668). The genomes of F. vesca and Prunus (almond) are represented by Fve_v4 and Prunus_v2, and the versions analyzed were the F. vesca genome v4.0.a1 and the P. dulcis “Texas” genome v2.0, respectively. Rosa_v1 and Rosa_v2 are rose genomes, and the versions analyzed were Rosa chinensis genome v1.0 and Rosa chinensis “Old Blush” homozygous genome v2.0, respectively. The numbers after the first and second “_” represent the genome version and the serial number of the chromosome, respectively. The red text on the right side of each chromosome represents the RNase T2 family genes, the black text represents the F-box family genes, the green text represents other types of genes, and the genes connected by red lines are those that were randomly selected for collinearity analysis in the enlarged area

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