Table 2 Genome metrics comparing Gillenia trifoliata with selected Rosaceae species
From: The Gillenia trifoliata genome reveals dynamics correlated with growth and reproduction in Rosaceae
Amygdaloideae | Rosoideae | |||||
|---|---|---|---|---|---|---|
Plant | M. domestica (GDDH13) | P. betuleafolia (Pbe-SD) | G.trifoliata | P. persica (v2) | F. vesca (v4.a2) | R. occidentalis (v3) |
Base chromosome number (x) | 17 | 17 | 9 | 8 | 7 | 7 |
Sequenced genome (Mb) | 643.2 | 532.7 | 296.3 | 227.4 | 240 | 290 |
BUSCO complete genes (%) | 94.9 | 94.8 | 98.0 | 99.0 | 98.1 | 93.9 |
TE(%) | 57.3 | 46.4 | 47.2 | 29.6 | 31.1 | 56.6 |
GC content (%) | 39.4 | 37.6 | 38.2 | 37.7 | na | na |
Number of protein-coding genes | 42,140 | 42,520a | 28,847 | 26,873 | 34,007 | 34,545 |
Number of transcripts | na | 66,308 | 30,259 | 47,089 | 64,598 | na |
Mean gene length (bp) | na | 3052 | 2594 | 3239 | 2953 | 3220 |
Gene density (genes/100 kb) | 6.7 | 8.0a | 9.7 | 11.8 | 14.2 | 11.9 |
