Table 3 Typing results between the Luminex method and NGS-based HLA typing for all inconsistent samples. Bold font corresponds to the typing results from NGS-based HLA typing
From: HLA-VBSeq v2: improved HLA calling accuracy with full-length Japanese class-I panel
HLA typing | HLA calling | |||||
|---|---|---|---|---|---|---|
Dataset | Sample | NGS-baseda | Luminex | HLA-VBSeq | HLA-VBSeq v2 | HLA*PRG:LA |
SJS | SJS01 | B*59:04 | B*59:01 | B*59:01 | B*59:01 | B*59:04 |
SJS02 | C*07:06 | C*07:01 | C*07:06 | C*07:06 | C*07:01 | |
SJS03 | C*08:22 | C*08:01 | C*08:22 | C*08:22 | C*08:01 | |
SJS04 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC | THC01 | A*02:15 N | A*02:07 | A*02:15 N | A*02:07 | A*02:07 |
THC02 | A*11:02 | A*11:01 | A*11:02 | A*11:01 | A*11:02 | |
THC03 | B*07:169 | B*07:02 | B*07:02 | B*07:02 | B*07:02 | |
THC04 | C*08:22 | C*08:01 | C*08:22 | C*08:22 | C*08:01 | |
THC05 | C*08:22 | C*08:01 | C*08:01 | C*08:22 | C*08:01 | |
THC06 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC07 | C*04:82 | C*04:01 | C*04:82 | C*04:82 | C*04:01 | |
THC08 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC09 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC10 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC11 | C*04:82 | C*04:01 | C*04:82 | C*04:82 | C*04:01 | |
THC12 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC13 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC14 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
THC15 | C*04:82 | C*04:01 | C*04:01 | C*04:82 | C*04:01 | |
