Extended Data Fig. 5: Differential expressed genes (DEG) induced by UVB.
From: UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis
a, Venn diagram showing the overlapping of DEGs induced by UVB in Col-0 and drm1 drm2 (dd). b, Correlation plot showing the expression level change (log2FC) of common UVB-responsive DEGs in Col-0 and dd (n = 327). c, Expression levels of marker genes, which are up-regulated by UVB, in Col-0 and dd. Data is mean with 95% confidence interval. d, Expression levels of DNA-damage induced genes in Col-0 and dd. Data is mean with 95% confidence interval. e, Expression levels of genes in UVB-signaling pathway. Data is mean with 95% confidence interval. Different letters denote significant differences (p < 0.05 by Student’s t-test) among samples. f, Venn diagram showing the overlapping of DEGs induced by long-term (10d, this study) and short-term (6 h, ref. 79) UVB treatment in Col-0. g and h, Heat map showing the expression of several UVB up-regulated (g) and down-regulated (h) DEGs in both long-term and short-term UVB treatment. i, Metaplots showing the CHH methylation level of UVB up-regulated TEs (n = 269). Data of 1 kb upstream and downstream of the TE body are shown.
