Extended Data Fig. 5: The phylogeny of LAFL(NF-YB, ABI3, FUS3, and LEC2) transcriptional regulators.
From: The Cycas genome and the early evolution of seed plants
(a) Phylogenetic tree of the NF-YB. The tree was constructed using the maximum likelihood method with 500 bootstrap replicates. The bootstrap values are shown on the branches. (b) Phylogenetic tree of the B3 domain containing the gene family of C. panzhihuaensis. Bootstrap values are shown on the braches. (c) Transcript expression level is indicated by TPM during seed development. The phylogenetic trees were built using RAxML (estimating branch support values by bootstrap iterations with 500 replicates) with PROTGAMMAGTRX amino acid substitution model. The abbreviated name given before the protein ID represents species name: CYCAS: Cycas panzhihuaensis, Gb: Ginkgo biloba, SEGI: Sequoiadendron giganteum, GMON: Gnetum montanum, PICABI: Picea abies, PITA: Pinus taeda, ATH, Arabidopsis thaliana, DEBAO: Cycas debaoensis, AMTR: Amborella trichopoda, OS: Oryza sativa, AFILI: Azolla filiculoides, SACU: Salvinia cucullata, SELMO: Selaginella moellendorffii, PPATEH: Physcomitrella patens, MARPO: Marchantia polymorpha.
