Extended Data Fig. 5: Comparison of BAS-, SAS- and MAS-occupied TSS-flanking regions and genes as determined by ChIP-seq. | Nature Plants

Extended Data Fig. 5: Comparison of BAS-, SAS- and MAS-occupied TSS-flanking regions and genes as determined by ChIP-seq.

From: Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes

Extended Data Fig. 5

a, Profile plots showing the enrichment of the SWI/SNF components at the genes bound by each component. b, Boxplots showing the enrichment of SWI/SNF components at the TSS-flanking region of their binding genes. The enrichment of SWI/SNF components was calculated at 200-bp bins of the TSS-flanking region. Sample size of each box plot: BRD1 (n = 10928), SWI3C (n = 11110), SYD (n = 7904), SWI3D (n = 10492), SYS1 (n = 8929), MINU2 (n = 10835), PMS2B (n = 13467). In box plots, center lines and box edges are medians and the interquartile range (IQR), respectively. Whiskers extend within 1.5 times the IQR. c, Venn diagrams showing the overlap of genes occupied by indicated SWI/SNF components. The overlapping significance is shown by P values as determined by hypergeometric test (one-tailed). RF (representation factor) represents the number of overlapping genes divided by the expected number of overlapping genes drawn from two independent groups.

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