Extended Data Fig. 7: The histone modification and expression levels of genes occupied by BAS, SAS and MAS components.

a, The H3ac, H3K4me3, and H3K27me3 levels at regions occupied by indicated BAS, SAS, and MAS components in the wild-type plants. The sample size of each boxplot: BRD1 (n = 12973), SWI3C (n = 13851), SYD (n = 9687), SWI3D (n = 13099), SYS1 (n = 11875), MINU2 (n = 11729), PMS2B (n = 15207), random (n = 10000). P values for Kruskal-Wallis tests indicate the differences of the histone modification levels within a group (marked by black lines). Lowercase letters above the boxplots show the results of Dunnett’s test, with statistically similar clusters grouped by the same letter. b, The expression levels of genes occupied by indicated BAS, SAS, and MAS components in the wild-type plants. The sample size of each boxplot: BRD1 (n = 12973), SWI3C (n = 13851), SYD (n = 9687), SWI3D (n = 13099), SYS1 (n = 11875), MINU2 (n = 11729), PMS2B (n = 15207), random (n = 10000). P values for Kruskal-Wallis tests indicate the expression differences within a group (marked by black lines). Lowercase letters above the boxplots show the results of Dunnett’s test, with statistically similar clusters grouped by the same letter. c, Heatmap showing the enrichment of H3ac and H3K4me3 at all the SWI/SNF components-occupied genes. The genes are subjected to sorting by the maximum enrichment value of BRD1 (left), SYD (middle), and MINU2 (right)-occupied regions. d, Enrichment of H3ac, H3K4me3, and H3K27me3 at BRD1, SYD and MINU2 enrichment deciles of total regions (n = 18552) occupied by SWI/SNF components. In box plots of a, b and d, center lines and box edges are medians and the interquartile range (IQR), respectively. Whiskers extend within 1.5 times the IQR.