Table 1 XopD-affected genes involved in ‘gene silencing’
From: The eINTACT system dissects bacterial exploitation of plant osmosignalling to enhance virulence
ID | Gene | Full name | Expression changea,b | Annotation |
|---|---|---|---|---|
AT1G63020 | NRPD1A | NUCLEAR RNA POLYMERASE D 1A | 5.17 | The unique, largest subunit of Pol IV required for siRNA synthesis20. |
AT2G19520 | MSI4 | MULTICOPY SUPPRESSOR OF IRA1 4 | 3.89 | Interacts with SUVH9 and is involved in RNA-directed DNA methylation by facilitating the recruitment of Pol V to chromatin56. |
AT4G13460 | SUVH9 | SU(VAR)3–9 HOMOLOGUE 9 | 3.77 | A SET-domain containing histone methyltransferase required for Pol V-mediated de novo methylation20. |
AT1G15910 | FDM1 | FACTOR OF DNA METHYLATION 1 | 2.96 | A SGS3-like protein required for de novo DNA methylation and siRNA accumulation20. |
AT2G25010 | MAIL1 | MAIN-LIKE 1 | 2.15 | A nuclear-localized aminotransferase-like protein that regulates silencing pathway independent of DNA methylation and short interfering RNAs57. |
AT2G28230 | MED20A | MEDIATOR 20A | −6.28 | Involved in miRNA biogenesis by recruiting Pol II to promoters of miRNA genes58. |
AT5G66750 | DDM1 | DECREASED DNA METHYLATION 1 | −5.71 | A chromatin remodeller required for the maintenance of DNA methylation20. |
AT3G20420 | RTL2 | RNASE THREE-LIKE PROTEIN 2 | −4.32 | A double-stranded RNA binding ribonuclease III, involved in siRNA production59. |
AT1G69770 | CMT3 | CHROMOMETHYLASE 3 | −4.16 | A chromomethylase involved in non-CG methylation20. |
AT3G03300 | DCL2 | DICER-LIKE 2 | −3.22 | A Dicer-like protein involved in siRNA production20. |
AT1G15215 | SHH1 | SAWADEE HOMEODOMAIN HOMOLOGUE 1 | −3.16 | A homeodomain protein that binds to methylated H3K9 and recruits Pol IV20. |
AT2G19430 | DWA1 | DDB1-BINDING WD40 PROTEIN HYPERSENSITIVE TO ABA 1 | −4.16 | A protein with a DWD motif involved in the production of secondary siRNA60. |
AT1G09700 | HYL1 | HYPONASTIC LEAVES 1 | −2.41 | A core miRNA biogenesis factor involved in mRNA cleavage29,31. |
