Extended Data Fig. 8: Developmental trajectory of UCs inferred by scVelo (a) and Monocle 3 (b). | Nature Plants

Extended Data Fig. 8: Developmental trajectory of UCs inferred by scVelo (a) and Monocle 3 (b).

From: Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation

Extended Data Fig. 8

a. Left panel, stream plot of RNA velocities on the UMAP embedding. Right panel, partition-based graph abstraction (PAGA) graph with velocity-directed edges. Arrow width indicates the transition probability between different clusters. b. Pseudo temporal ordering of nuclei after manually specified developmental root cells.

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