Extended Data Fig. 3: Gene and transposon density in the Ku123 genome regions containing the ws3-lg1-gl2 and c1-sh1-wx1 intervals.

a, Gene density within the ws3-lg1-gl2 interval, plotted in 250 kb windows. b, Transposable element (TE) density within the same interval, plotted in 500 kb windows. c, TE density excluding the most common LTRs, Ty1 (Copia) and Ty3 (Gypsy). d-f, Similar plots as in a-c, but for the c1-sh1-wx1 interval. Colored vertical lines represent the position of the markers used to measure recombination frequency (Rf).