Table 1 List of the 10 genes with lowest and highest fold-change values among the differentially expressed genes in G. vaginalis cultured under biofilm vs. planktonic conditions
Gene | Definition | Fold-change | |
|---|---|---|---|
(Biofilm vs. planktonic cells) | |||
Rank | Downregulated | ||
1 | HMPREF0424_0046 | 50S ribosomal protein L34 | −21.93 |
2 | HMPREF0424_0269 | 50S ribosomal protein L30 | −8.99 |
3 | HMPREF0424_0429 (xseA) | Exodeoxyribonuclease VII large subunit | −6.73 |
4 | HMPREF0424_0260 | 30S ribosomal protein S3 | −5.43 |
5 | HMPREF0424_1336 | Periplasmic-binding protein and sugar-binding domain of the LacI family protein | −5.39 |
6 | HMPREF0424_0259 | 50S ribosomal protein L22 | −5.36 |
7 | HMPREF0424_0258 | 50S ribosomal protein L2 | −4.93 |
8 | HMPREF0424_0471 (gap) | Glyceraldehyde 3-phosphate dehydrogenase domain-containing protein | −4.81 |
9 | HMPREF0424_0276 | 30S ribosomal protein S11 | −3.86 |
10 | HMPREF0424_0394 (gpmA) | Phosphoglyceratemutase | −3.62 |
Rank | Upregulated | ||
1 | HMPREF0424_0510 | Uncharacterized protein | 14.41 |
2 | HMPREF0424_0563 | Pyroglutamyl-peptidase I | 9.57 |
3 | HMPREF0424_1220 | Aminotransferase, class I/II | 6.74 |
4 | HMPREF0424_0420 | LPXTG-motif cell wall anchor domain-containing protein | 6.30 |
5 | HMPREF0424_0397 | Uncharacterized protein | 5.76 |
6 | HMPREF0424_0573 | LysM domain-containing protein | 5.51 |
7 | HMPREF0424_0943 | ComEA protein | 5.15 |
8 | HMPREF0424_0166 | Uncharacterized protein | 4.28 |
9 | HMPREF0424_0888 | NLPA lipoprotein | 4.24 |
10 | HMPREF0424_0797 | Uncharacterized protein | 4.12 |
