Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

Advertisement

npj Biofilms and Microbiomes
  • View all journals
  • Search
  • My Account Login
  • Content Explore content
  • About the journal
  • Publish with us
  • Sign up for alerts
  • RSS feed
  1. nature
  2. npj biofilms and microbiomes
  3. articles
  4. article
From association to intervention: Muribaculaceae driven SCFAs production enhances boar semen quality via inflammation alleviation
Download PDF
Download PDF
  • Article
  • Open access
  • Published: 16 February 2026

From association to intervention: Muribaculaceae driven SCFAs production enhances boar semen quality via inflammation alleviation

  • Liangliang Guo1,
  • Xiaoqi Pei1,
  • Jiajian Tan2,
  • Haiqing Sun2,
  • Siwen Jiang3,
  • Hongkui Wei1 &
  • …
  • Jian Peng1,4,5 

npj Biofilms and Microbiomes , Article number:  (2026) Cite this article

We are providing an unedited version of this manuscript to give early access to its findings. Before final publication, the manuscript will undergo further editing. Please note there may be errors present which affect the content, and all legal disclaimers apply.

Subjects

  • Genetics
  • Microbiology

Abstract

The gut microbiota plays a vital role in host reproduction, yet its contribution to semen quality in boars remains unclear. In this study, we analyzed 556 boars from three commercial breeds and identified Muribaculaceae as a key microbial taxon positively associated with sperm quality, with the effect mediated by short-chain fatty acids (SCFAs). This association was validated in Yorkshire boars with extreme semen phenotypes. Fecal microbiota transplantation in mice confirmed that enrichment of Muribaculaceae improved semen quality, likely through enhanced SCFA production and reduced inflammation in the gut and reproductive tract. Furthermore, in vitro fermentation and mouse experiments demonstrated that a designed functional fiber selectively promoted Muribaculaceae, increased SCFA levels, and improved sperm quality. These findings suggest a functionally supported and potentially translational association between gut microbiota and boar fertility, suggesting that targeted dietary modulation of Muribaculaceae may represent a novel strategy to enhance reproductive performance in livestock.

Similar content being viewed by others

Gut microbiota and SCFAs improve the treatment efficacy of chemotherapy and immunotherapy in NSCLC

Article Open access 28 July 2025

Effect of in vitro cultivation on human gut microbiota composition using 16S rDNA amplicon sequencing and metabolomics approach

Article Open access 21 February 2023

Mortality and microbial diversity after allogeneic hematopoietic stem cell transplantation: secondary analysis of a randomized nutritional intervention trial

Article Open access 02 June 2021

Data availability

Boar fecal 16S rRNA gene sequencing data are available from the Sequence Read Archive under accession number PRJNA1007937. Mouse fecal 16S rRNA gene sequencing data are available from the Genome Sequence Archive under accession number CRA028648.

References

  1. Wang, C. et al. Linear model analysis of the influencing factors of boar longevity in Southern China. Theriogenology 93, 105–110 (2017).

    Google Scholar 

  2. Li, X. et al. Estimation of genetic parameters and season effects for semen traits in three pig breeds of South China. J. Anim. Breed. Genet. 136, 183–189 (2019).

    Google Scholar 

  3. Wang, C. et al. Linear growth model analysis of factors affecting boar semen characteristics in Southern China. J. Anim. Sci. 95, 5339–5346 (2017).

    Google Scholar 

  4. Zhang, P. et al. Improvement in sperm quality and spermatogenesis following faecal microbiota transplantation from alginate oligosaccharide dosed mice. Gut 70, 222–225 (2021).

    Google Scholar 

  5. Zhang, T. et al. Disrupted spermatogenesis in a metabolic syndrome model: the role of vitamin A metabolism in the gut-testis axis. Gut 71, 78–87 (2022).

    Google Scholar 

  6. Ding, N. et al. Impairment of spermatogenesis and sperm motility by the high-fat diet-induced dysbiosis of gut microbes. Gut 69, 1608–1619 (2020).

    Google Scholar 

  7. Zhao, Q. et al. Polyamine metabolism links gut microbiota and testicular dysfunction. Microbiome 9, 224 (2021).

    Google Scholar 

  8. Yan, X. et al. Gut-testis axis: microbiota prime metabolome to increase sperm quality in young type 2 diabetes. Microbiol. Spectr. 10, e0142322 (2022).

    Google Scholar 

  9. Bergamaschi, M. et al. Gut microbiome composition differences among breeds impact feed efficiency in swine. Microbiome 8, 1–15 (2020).

    Google Scholar 

  10. Pajarillo, E. A. et al. Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines. J. Microbiol. 52, 646–651 (2014).

    Google Scholar 

  11. Lin, Y. et al. The improvement of semen quality by dietary fiber intake is positively related with gut microbiota and SCFA in a boar model. Front. Microbiol. 13, 863315 (2022).

    Google Scholar 

  12. Liu, J. B., Chen, K., Li, Z. F., Wang, Z. Y. & Wang, L. Glyphosate-induced gut microbiota dysbiosis facilitates male reproductive toxicity in rats. Sci. Total Environ. 805, 150368 (2022).

    Google Scholar 

  13. Al-Asmakh, M. et al. The gut microbiota and developmental programming of the testis in mice. PLoS ONE 9, e103809 (2014).

    Google Scholar 

  14. Spor, A., Koren, O. & Ley, R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 9, 279–290 (2011).

    Google Scholar 

  15. Liu, P. et al. Dietary corn bran altered the diversity of microbial communities and cytokine production in weaned pigs. Front. Microbiol. 9, 2090 (2018).

    Google Scholar 

  16. Cheng, C. et al. Maternal soluble fiber diet during pregnancy changes the intestinal microbiota, improves growth performance, and reduces intestinal permeability in piglets. Appl. Environ. Microbiol. 84, https://doi.org/10.1128/AEM.01047-18 (2018).

  17. Li, J. W. et al. Gut microbial diversity among Yorkshire, Landrace and Duroc boars and its impact on semen quality. Amb. Express 12, 1–10 (2022).

    Google Scholar 

  18. Li, F., Hitch, T. C. A., Chen, Y., Creevey, C. J. & Guan, L. L. Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle. Microbiome 7, 6 (2019).

    Google Scholar 

  19. Zhao, X. et al. Host-microbiota interaction-mediated resistance to inflammatory bowel disease in pigs. Microbiome 10, 115 (2022).

    Google Scholar 

  20. Lu, D. et al. Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth. Microbiome 6, 4 (2018).

    Google Scholar 

  21. Aliakbari, A. et al. Genetic relationships between feed efficiency and gut microbiome in pig lines selected for residual feed intake. J. Anim. Breed. Genet. 138, 491–507 (2021).

    Google Scholar 

  22. Oliphant, K. & Allen-Vercoe, E. Macronutrient metabolism by the human gut microbiome: major fermentation by-products and their impact on host health. Microbiome 7, 91 (2019).

    Google Scholar 

  23. Flint, H. J., Scott, K. P., Duncan, S. H., Louis, P. & Forano, E. Microbial degradation of complex carbohydrates in the gut. Gut Microbes 3, 289–306 (2012).

    Google Scholar 

  24. Lagkouvardos, I. et al. Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7, 28 (2019).

    Google Scholar 

  25. Waters, J. L. & Ley, R. E. The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health. BMC Biol. 17, 83 (2019).

    Google Scholar 

  26. Xie, J. et al. Short-chain fatty acids produced by ruminococcaceae mediate alpha-linolenic acid promote intestinal stem cells proliferation. Mol. Nutr. Food Res. 66, e2100408 (2022).

    Google Scholar 

  27. Shang, Q., Liu, S., Liu, H., Mahfuz, S. & Piao, X. Impact of sugar beet pulp and wheat bran on serum biochemical profile, inflammatory responses and gut microbiota in sows during late gestation and lactation. J. Anim. Sci. Biotechnol. 12, 54 (2021).

    Google Scholar 

  28. Mizrahi, I., Wallace, R. J. & Morais, S. The rumen microbiome: balancing food security and environmental impacts. Nat. Rev. Microbiol. 19, 553–566 (2021).

    Google Scholar 

  29. Xue, M. et al. Gut Microbe Rikenellaceae_RC9_gut_group and Knoellia-Mediated acetic acid regulates glucose and lipid metabolism in the muscle of freshwater drum (Aplodinotus grunniens) Under High-Fat Diets. Aquac. Nutr. 2025, 9667909 (2025).

    Google Scholar 

  30. Boer, T. et al. Isolation and characterization of novel acetogenic strains of the genera Terrisporobacter and Acetoanaerobium. Front. Microbiol. 15, 1426882 (2024).

    Google Scholar 

  31. Liu, H. et al. Ecological dynamics of the gut microbiome in response to dietary fiber. ISME J. 16, 2040–2055 (2022).

    Google Scholar 

  32. Ormerod, K. L. et al. Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals. Microbiome 4, 36 (2016).

    Google Scholar 

  33. Wang, Z. et al. Muribaculum intestinale restricts Salmonella Typhimurium colonization by converting succinate to propionate. ISME J. 19, https://doi.org/10.1093/ismejo/wraf069 (2025).

  34. Xu, C. et al. Combined soluble fiber-mediated intestinal microbiota improve insulin sensitivity of obese mice. Nutrients. 12, https://doi.org/10.3390/nu12020351 (2020).

  35. Smith, P. M. et al. The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis. Science 341, 569–573 (2013).

    Google Scholar 

  36. Alhaj, H. W. et al. Effects of dietary sodium butyrate on reproduction in adult breeder roosters. Anim. Reprod. Sci. 196, 111–119 (2018).

    Google Scholar 

  37. Guo, L. et al. Gut microbiological disorders reduce semen utilization rate in Duroc boars. Front. Microbiol. 11, 581926 (2020).

    Google Scholar 

  38. Callahan, B. J. et al. DADA2: high-resolution sample inference from Illumina amplicon data. Nat. Methods 13, 581–583 (2016).

    Google Scholar 

  39. Quast, C. et al. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41, D590–D596 (2013).

    Google Scholar 

  40. Wu, Y., Li, H., Miao, Y., Peng, J. & Wei, H. Effects of methionine restriction from different sources on sperm quality in aging mice. Nutrients. 15, https://doi.org/10.3390/nu15224782 (2023).

  41. Xu, C. et al. The effect of functional fiber on microbiota composition in different intestinal segments of obese mice. Int. J. Mol. Sci. 22, https://doi.org/10.3390/ijms22126525 (2021).

  42. Noack, J., Timm, D., Hospattankar, A. & Slavin, J. Fermentation profiles of wheat dextrin, inulin and partially hydrolyzed guar gum using an in vitro digestion pretreatment and in vitro batch fermentation system model. Nutrients 5, 1500–1510 (2013).

    Google Scholar 

  43. Xia, X., Wei, H., Hu, L. & Peng, J. Hydratability and improved fermentability in vitro of guar gum by combination of xanthan gum. Carbohydr. Polym. 258, 117625 (2021).

    Google Scholar 

Download references

Acknowledgements

This work was supported by the China Agriculture Research System (CARS-35), the Key Program of the National Natural Science Foundation of China (32430099), and the Fundamental Research Funds for the Central Universities (2662023DKPY002). We acknowledge Yangxiang Joint Stock Company members for their assistance in the phenotype collection and sampling.

Author information

Authors and Affiliations

  1. Department of Animal Nutrition and Feed Science, College of Animal Science and Technology, Huazhong Agricultural University, Wuhan, China

    Liangliang Guo, Xiaoqi Pei, Hongkui Wei & Jian Peng

  2. YangXiang Joint Stock Company, Guigang, China

    Jiajian Tan & Haiqing Sun

  3. Key Lab of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education & Key Lab of Swine Genetics and Breeding of Ministry of Agriculture, Huazhong Agricultural University, Wuhan, China

    Siwen Jiang

  4. The Cooperative Innovation Center for Sustainable Pig Production, Wuhan, China

    Jian Peng

  5. Frontiers Science Center for Animal Breeding and Sustainable Production, Wuhan, China

    Jian Peng

Authors
  1. Liangliang Guo
    View author publications

    Search author on:PubMed Google Scholar

  2. Xiaoqi Pei
    View author publications

    Search author on:PubMed Google Scholar

  3. Jiajian Tan
    View author publications

    Search author on:PubMed Google Scholar

  4. Haiqing Sun
    View author publications

    Search author on:PubMed Google Scholar

  5. Siwen Jiang
    View author publications

    Search author on:PubMed Google Scholar

  6. Hongkui Wei
    View author publications

    Search author on:PubMed Google Scholar

  7. Jian Peng
    View author publications

    Search author on:PubMed Google Scholar

Contributions

J.P. conceived and designed the experiments and wrote and revised the manuscript. H.K.W. designed the experiments and revised the manuscript. L.L.G. performed the experiments, collected the samples, analyzed the data, and wrote the manuscript. X.Q.P. conducted the mouse experiments, collected samples and performed the tests. J.J.T. and H.Q.S. collected the samples. S.W.J. analyzed the data. All the authors have read and approved the final manuscript.

Corresponding authors

Correspondence to Hongkui Wei or Jian Peng.

Ethics declarations

Competing interests

The authors declare no competing interests.

Additional information

Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Supplementary Information

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License, which permits any non-commercial use, sharing, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if you modified the licensed material. You do not have permission under this licence to share adapted material derived from this article or parts of it. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by-nc-nd/4.0/.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Guo, L., Pei, X., Tan, J. et al. From association to intervention: Muribaculaceae driven SCFAs production enhances boar semen quality via inflammation alleviation. npj Biofilms Microbiomes (2026). https://doi.org/10.1038/s41522-026-00933-9

Download citation

  • Received: 05 September 2025

  • Accepted: 31 January 2026

  • Published: 16 February 2026

  • DOI: https://doi.org/10.1038/s41522-026-00933-9

Share this article

Anyone you share the following link with will be able to read this content:

Sorry, a shareable link is not currently available for this article.

Provided by the Springer Nature SharedIt content-sharing initiative

Download PDF

Associated content

Collection

Microbiomes and their roles in farmed animals

Advertisement

Explore content

  • Research articles
  • Reviews & Analysis
  • News & Comment
  • Collections
  • Follow us on X
  • Sign up for alerts
  • RSS feed

About the journal

  • Aims & Scope
  • Content types
  • Journal Information
  • About the Editors
  • Open Access
  • Contact
  • Calls for Papers
  • Article Processing Charges
  • Editorial policies
  • Journal Metrics
  • About the Partner

Publish with us

  • For Authors and Referees
  • Language editing services
  • Open access funding
  • Submit manuscript

Search

Advanced search

Quick links

  • Explore articles by subject
  • Find a job
  • Guide to authors
  • Editorial policies

npj Biofilms and Microbiomes (npj Biofilms Microbiomes)

ISSN 2055-5008 (online)

nature.com sitemap

About Nature Portfolio

  • About us
  • Press releases
  • Press office
  • Contact us

Discover content

  • Journals A-Z
  • Articles by subject
  • protocols.io
  • Nature Index

Publishing policies

  • Nature portfolio policies
  • Open access

Author & Researcher services

  • Reprints & permissions
  • Research data
  • Language editing
  • Scientific editing
  • Nature Masterclasses
  • Research Solutions

Libraries & institutions

  • Librarian service & tools
  • Librarian portal
  • Open research
  • Recommend to library

Advertising & partnerships

  • Advertising
  • Partnerships & Services
  • Media kits
  • Branded content

Professional development

  • Nature Awards
  • Nature Careers
  • Nature Conferences

Regional websites

  • Nature Africa
  • Nature China
  • Nature India
  • Nature Japan
  • Nature Middle East
  • Privacy Policy
  • Use of cookies
  • Legal notice
  • Accessibility statement
  • Terms & Conditions
  • Your US state privacy rights
Springer Nature

© 2026 Springer Nature Limited

Nature Briefing Microbiology

Sign up for the Nature Briefing: Microbiology newsletter — what matters in microbiology research, free to your inbox weekly.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing: Microbiology