Table 1 The sources and locations for the 38 gene expression datasets analyzed
Dataset | No. of patients | Permanent identifier | References |
|---|---|---|---|
NKI | 337 | 10.1038/415530a | |
UCSF | 162 | GSE123833 | |
STNO2 | 122 | GSE4335 | |
NCI | 99 | 10.1073/pnas.1732912100 | |
UNC4 | 337 | GSE18229 | |
CAL | 118 | E-TABM-158 | |
MDA4 | 129 (65)‡ | GSE123832 | |
KOO | 88 | GSE123831 | |
HLP | 53 | E-TABM-543 | |
EXPO | 353 | GSE2109 | |
VDX | 344 | GSE2034/GSE5327 | |
MSK | 99 | GSE2603 | |
UPP | 251 (190)‡ | GSE3494 | |
STK | 159 | GSE1456 | |
UNT | 137 (92)‡ | GSE2990 | |
DUKE | 171 | GSE3143 | |
TRANSBIG | 198 | GSE7390 | |
DUKE2 | 160 | GSE6961 | |
MAINZ | 200 | GSE11121 | |
LUND2 | 105 | GSE5325 | |
LUND | 143 | GSE5325 | |
FNCLCC | 150 | GSE7017 | |
EMC2 | 204 | GSE12276 | |
MUG | 152 | GSE10510 | |
NCCS | 183 | GSE5364 | |
MCCC | 75 | GSE19177 | |
EORTC10994 | 49 | GSE1561 | |
DFHCC | 115 | GSE19615 | |
DFHCC2 | 84 (75)‡ | GSE18864 | |
DFHCC3 | 40 (26)‡ | GSE3744 | |
DFHCC4 | 129 | GSE5460 | |
MAQC2 | 230 | GSE20194 | |
TAM | 345 (242)‡ | GSE6532/GSE9195 | |
MDA5 | 298 | GSE17705 | |
VDX3 | 136 | GSE12093 | |
PNC | 248 | GSE20713 | |
TCGA | 517 | https://tcga-data.nci.nih.gov/docs/publications/brca_2012/ | |
METABRIC | 1643 | EGAS00000000083 |