Table 2 Antibody staining panels used for BC03 TMA.

From: Qualification of a multiplexed tissue imaging assay and detection of novel patterns of HER2 heterogeneity in breast cancer

Cycle #

BC03_A (PR/Ki67)

BC03_B (ER/p53)

BC03_C (AR/p53/Ki67)

BC03_D (HER2)

Background

Hoechst1

Hoechst1

Hoechst1

Hoechst1

Hoechst1

Hoechst1

Hoechst1

Hoechst1

FITC_1

A488

FITC_1

A488

FITC_1

A488

FITC_1

A488

Cy3_1

A555

Cy3_1

A555

Cy3_1

A555

Cy3_1

A555

Cy5_1

A647

Cy5_1

A647

Cy5_1

A647

Cy5_1

A647

2

Hoechst2

Hoechst2

Hoechst2

Hoechst2

Hoechst2

Hoechst2

Hoechst2

Hoechst2

FITC_2

HER2 (TF-MA5-14509)

FITC_2

ER (ab16660)

FITC_2

p53 (ab32389)

FITC_2

HER2 (TF-MA5-14509)

Cy3_2

14-3-3 (sc-629-G)

Cy3_2

14-3-3 (sc-629-G)

Cy3_2

14-3-3 (sc-629-G)

Cy3_2

14-3-3 (sc-629-G)

Cy5_2

PR (Dako-M3569)

Cy5_2

p53 (Dako_M7001)

Cy5_2

AR (TF-MA5-13426)

Cy5_2

p53 (ab154036)

3

Hoechst3

Hoechst3

Hoechst3

Hoechst3

Hoechst3

Hoechst3

Hoechst3

Hoechst3

FITC_3

PR-488 (ab199244)

FITC_3

PR-488 (ab199244)

FITC_3

p53-488 (CS5429)

FITC_3

HER2-488 (RD-FAB9589G)

Cy3_3

PR-PE (CS23353)

Cy3_3

ER-PE (CS74244)

Cy3_3

AR-555 (CS8956)

Cy3_3

HER2-PE (CS98710)

Cy5_3

PR-647 (ab199455)

Cy5_3

PR-660 (EB50-9764-80)

Cy5_3

AR-647 (AB194195)

Cy5_3

HER2-647 (BL324412)

4

Hoechst4

Hoechst4

Hoechst4

Hoechst4

Hoechst4

Hoechst4

Hoechst4

Hoechst4

FITC_4

PR-488 (ab199244)

FITC_4

Ki67-488 (CS11882)

FITC_4

PR-488 (ab199244)

FITC_4

Ki67-488 (CS11882)

Cy3_4

Ki67-570 (EB41-5699-82)

Cy3_4

ER-568 (ab207261)

Cy3_4

CK-570 (EB41-9003-82)

Cy3_4

CK-570 (EB41-9003-82)

Cy5_4

PR-660 (EB50-9764-80)

Cy5_4

HER2-647 (RD-FAB1129R)

Cy5_4

p53-647 (ab224942)

Cy5_4

HER2-647 (ab225510)

5

Hoechst5

Hoechst5

Hoechst5

Hoechst5

Hoechst5

Hoechst5

Hoechst5

Hoechst5

FITC_5

Ki67-488 (CS11882)

FITC_5

p53-488 (CS5429)

FITC_5

Ki67-488 (CST11882)

FITC_5

PR-488 (ab199244)

Cy3_5

ER-PE (CS74244)

Cy3_5

CK-570 (EB41-9003-82)

Cy3_5

Ki67-570 (EB41-5699-82)

Cy3_5

CK-555 (CS3478)

Cy5_5

Ki67-647 (CS12075)

Cy5_5

p53-647 (ab224942)

Cy5_5

Ki67-647 (BL350509)

Cy5_5

HER2-647 (RD-FAB1129R)

6

Hoechst6

Hoechst6

Hoechst6

Hoechst6

Hoechst6

Hoechst6

Hoechst6

Hoechst6

FITC_6

p53-488 (CS5429)

FITC_6

HER2-488 (RD-FAB9589G)

FITC_6

HER2-488 (RD-FAB9589G)

FITC_6

p53-488 (CS5429)

Cy3_6

ER-568 (ab207261)

Cy3_6

PR-PE (CS23353)

Cy3_6

HER2-PE (CS98710)

Cy3_6

ER-PE (CS74244)

Cy5_6

ER-647 (ab205851)

Cy5_6

PR-647 (ab199455)

Cy5_6

HER2-647 (BL324412)

Cy5_6

AR-647 (AB194195)