Table 1 Characteristics of the 65 NSIGHT1 probands
Cases (rWGS, n = 32) | Controls (n = 33) | ||
|---|---|---|---|
Sex | Female (n, %) | 15 (47%) | 11 (33%) |
Male (n, %) | 16 (50%) | 21 (64%) | |
Undetermined (n, %) | 1 (3%) | 1 (3%) | |
Demographics | Caucasian (n, %) | 25 (78%) | 27 (82%) |
African, African American (n, %) | 2 (6%) | 1 (3%) | |
Other race (n, %) | 5 (16%) | 5 (15%) | |
Hispanic (n, %) | 2 (6%) | 3 (9%) | |
Consanguinity (n, %) | 1 (3%) | 2 (6%) | |
Birth characteristics | Gestational age (average, wks) | 36.0 | 35.9 |
Weight (average, kg) | 2.5 | 2.4 | |
Low birth weight (<2500 g, n, %) | 14 (44%) | 9 (27%) | |
Extremely low birth weight (<1000 g, n, %) | 1 (3%) | 3 (9%) | |
APGAR at 1 min (average) | 6.1 | 5.1 | |
APGAR at 5 min (average) | 7.8 | 6.4 | |
Symptom Onset (average day of life) | 2.3 | 2.1 | |
Primary system involved by disease | Congenital anomalies/musculoskeletal | 10 (31%) | 13 (39%) |
Neurological | 5 (16%) | 11 (33%) | |
Cardiovascular findings | 9 (28%) | 2 (6%) | |
Endocrine/metabolic | 1 (3%) | 3 (9%) | |
Respiratory findings | 4 (13%) | 0 (0%) | |
Renal | 1 (3%) | 2 (6%) | |
Dermatologic | 1 (3%) | 0 (0%) | |
Multiple system | 1 (3%) | 0 (0%) | |
Hepatic | 0 (0%) | 0 (0%) | |
Enrollment and standard clinical testsa | Day of life at enrollment (average, range) | 22.8 (1–101) | 22.0 (1–80) |
Probands receiving standard clinical tests (n, %) | 30 (93.8%) | 33 (100%) | |
Day of life 1st standard clinical test ordered (average, range) | 11.6 (0–66) | 15.6 (0–120) | |
All standard clinical tests ordered (average, range) | 2.8 (0–7) | 3.4 (1–10) | |
Probands receiving Standard Clinical NGS panels, WES or WGS (n, %) | 17 (53%) | 24 (73%) | |
Standard Clinical NGS panels, WES and WGS Tests Ordered (n, range) | 22 (0–2) | 43 (0–4) | |
Probands receiving rWGSb | 32 (100%) | 5 (15%) | |
Genetic disease diagnoses | Diagnosis (Standard Clinical Test or rWGS; n, %)b | 13 (41%) | 8 (24%) |
Diagnosis by Standard Clinical Tests (n, %) | 7 (22%) | 8 (24%) | |
Diagnosis by rWGS (n, %)b | 10 (31%) | 2 (6%) | |
DOL diagnosis by Standard Clinical Test (median, range) | 66 (16–151) | 130 (37–451) | |
Time to Diagnosis by Standard Clinical Test (average, range) | 45 (16–150) | 110 (31–450) |