Table 2 Sequence variants in MYH3, their frequencies in gnomAD and bioinformatic scores.

From: Expanding the mutation and phenotype spectrum of MYH3-associated skeletal disorders

Family

Inheritance

Nucleotide change#

Predicted amino acid change

gnomAD*

PolyPhen-2

SIFT

Phylo-P

Affecting splicea

CADD

A

AD

c.841G>A

p.(Glu281Lys)

Not reported

0.995

Deleterious

6.02

No

32

B

AD

c.1400A>C

p.(Glu467Ala)

Not reported

1.000

Deleterious

4.73

No

28

C

AD

c.3661_3663delGAG

p.(Glu1221del)

Not reported

NA

NA

NA

No

NA

D

AR

c.3249–9_3249–5delTCTTC

Not reported

NA

NA

NA

Yes

NA

c.1582-6A>G

0.00058

NA

NA

−0.36

Yes

21

E

AR

c.3062delT

p.(Leu1021*)

Not reported

NA

NA

5.05

No

NA

c.4244T>G

p.(Leu1415Arg)

Not reported

1.000

Deleterious

5.05

No

30

F

AR

c.–9+1G>A

0.01064

NA

NA

2.87

Yes

33

c.5658+3_5658+6del

Not reported

NA

NA

NA

Yes

16

G

AR

c.–9+1G>A

0.01064

NA

NA

2.87

Yes

33

c.1002+1G>A

0.00004

NA

NA

6.02

Yes

34

H

AR

c.–9+1G>A

0.01064

NA

NA

2.87

Yes

33

c.4000del

p.(Leu1334Cysfs*75)

Not reported

NA

NA

NA

No

33

I

AR

c.–9+1G>A

0.01064

NA

NA

2.87

Yes

33

c.5220_5223del

p.(Ser1740Argfs*)

Not reported

NA

NA

NA

No

NA

J

AR

c.–9+1G>A

0.01064

NA

NA

2.87

Yes

33

c.4357-10G>A

0.00008

NA

NA

−0.3

Yes

12

  1. NA not available.
  2. #NM_002470.4 (MYH3), *dataset v2.1.1 based on highest MAF in population, aaffecting splice according to Alamut visual 2.14.