Table 1 Comparison of the differentially expressed gene counts from in-house and common pipeline analyses.

From: Meta-analysis of the space flight and microgravity response of the Arabidopsis plant transcriptome

GeneLab Accession

Assay

GeneLab count

Original count

Loci in both

Difference

In-house reference

GLDS-17

Microarray

2459

499

34

1960

37

GLDS-44

Microarray

4031

3826

2597

205

41

GLDS-121

Microarray

2122

2177

2121

–55

40

GLDS-37

RNA-seq

2785

2084

927

701

38

GLDS-38

RNA-seq

3870

2919

2404

951

39

  1. Data is taken from the original spaceflight research publications (in-house, i.e., using the original authors’ analyses with p ≤ 0.01) and the GeneLab analysis (p ≤ 0.01, adjusted for multiple hypothesis testing using the Benjamini and Hochberg method).
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