Table 2 Studies used in developing the plant transcriptional Matrix.
From: Meta-analysis of the space flight and microgravity response of the Arabidopsis plant transcriptome
Accession | Study title | Assay type | Refs. |
|---|---|---|---|
GLDS-7 | The Arabidopsis spaceflight transcriptome: a comparison of whole plants to discrete root hypocotyl and shoot responses to the orbital environment | Microarray | |
GLDS-17 | Transcription profiling by array of the response of Arabidopsis cultivar Columbia etiolated seedlings and undifferentiated tissue culture cells to the spaceflight environment | Microarray | |
GLDS-37 | Comparison of the spaceflight transcriptome of four commonly used Arabidopsis thaliana ecotypes (Col, Ws, Ler and Cvi) | RNA-seq | |
GLDS-38 | Proteomics and transcriptomics analysis of Arabidopsis seedlings in microgravity | RNA-seq | |
GLDS-44 | Transcriptomics analysis of etiolated Arabidopsis thaliana seedlings in response to microgravity | Microarray | |
GLDS-46 | Gamma radiation and HZE treatment of seedlings in Arabidopsis | Microarray | 60 |
GLDS-120 | Genetic dissection of the spaceflight transcriptome responses in plants: are some responses unnecessary? | RNA-seq | |
GLDS-121 | Biological Research in Canisters-16 (BRIC-16): investigations of the plant cytoskeleton in microgravity with gene profiling and cytochemistry | Microarray | |
GLDS-136 | Dissecting low atmospheric pressure stress: transcriptome responses to the components of hypobaria in Arabidopsis | Microarray | 61 |
GLDS-147 | Arg1 functions in the physiological adaptation of undifferentiated plant cells to spaceflight | Microarray | |
GLDS-205 | HSFA2 functions in the physiological adaptation of undifferentiated plant cells to spaceflight microgravity environment | Microarray | 62 |
GLDS-208 | Comparative gene expression analysis in the Arabidopsis thaliana root apex using RNA-seq and microarray transcriptome profiles | Microarray and RNA-seq | |
GLDS-213 | A whole-genome microarray study of Arabidopsis cell cultures exposed to microgravity for 5 days on board of Shenzhou 8 | Microarray | 63 |
GLDS-218 | Spaceflight-induced alternative splicing during seedling development in Arabidopsis thaliana | RNA-seq | 64 |
GLDS-251 | RNA-seq analysis of the response of Arabidopsis thaliana to fractional gravity under blue-light stimulation during spaceflight | RNA-seq | 65 |
