Fig. 5: Analysis of hypoxia-related cluster found in the FLT clustering result. | npj Microgravity

Fig. 5: Analysis of hypoxia-related cluster found in the FLT clustering result.

From: GLARE: discovering hidden patterns in spaceflight transcriptome using representation learning

Fig. 5: Analysis of hypoxia-related cluster found in the FLT clustering result.

a Heatmap of normalized FPKM values on the cluster. b Enriched GO terms on the cluster from Metascape. c Stress Knowledge Map (SKM) on five Transcription Factors (TFs; green highlight) in hypoxia-related cluster: `DREB2A', `RHL41/ZAT12', `MYC2', `RRTF1/ERF109', and `STZ/ZAT10'. Purple lines: physical interaction (binding), teal lines: TF interactions. Annotations of relationships to Abscisic acid (ABA), Ethylene, Jasmonate, Light/cold, Reactive oxygen species (ROS), Salicylic acid, and Xylem are from manual inspection of each gene’s annotated roles in The Arabidopsis Information Resource (https://www.arabidopsis.org).

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