Table 1 List of transcription factors with potential significance to the identified putative cis-regulatory elements among the genes whose expression levels were altered in the WT, gi, 35S:CO and FG in response to spaceflight microgravity

From: Potential regulatory modules to integrate microgravity signals into flowering pathways in Arabidopsis thaliana grown in space

	Name	Gene_ID	Binding motif*	Family	Enrichment score (%)**
	Name	Gene_ID	Binding motif*	Family	WT	gi	35S:CO	FG
Group 1(common microgravity response)
	AT1G28160	AT1G28160	CCACCGCC	ERF	166	170	172	165
	AT1G75490	AT1G75490	CCACCGCC	ERF	166	168	169	166
	AT1G71450	AT1G71450	CCACCGCC	ERF	166	169	166	169
	AT1G44830	AT1G44830	CCACCGCC	ERF	164	169	165	161
	AT1G77640	AT1G77640	CACCGAC	ERF	163	175	165	170
	AT4G18450	AT4G18450	CGCCGCC	ERF	163	174	170	173
	ESE3	AT5G25190	CGCCGC	ERF	163	168	168	161
	ESE1	AT3G23220	CGCCGCC	ERF	162	164	166	161
	ABR1	AT5G64750	CGCCGCC	ERF	162	173	165	167
	RAP2.11	AT5G19790	GCCGGC	ERF	162	167	165	161
	RAP2.12	AT1G53910	CGCCGCC	ERF	160	166	161	158
	RAP2.6	AT1G43160	CGCCGCC	ERF	159	167	158	161
	AT1G22810	AT1G22810	CACCGAC	ERF	159	164	165	158
	AT5G67000	AT5G67000	GCGGCGG	ERF	158	168	152	166
	AT5G18450	AT5G18450	GCCGAC	ERF	157	170	172	159
	AT4G28140	AT4G28140	CGCCGCC	ERF	157	172	166	169
	ERF15	AT2G31230	CGCCGCC	ERF	157	164	152	160
	ERF104	AT5G61600	CGCCGCC	ERF	157	161	155	161
	ERF2	AT5G47220	CGCCGCC	ERF	157	163	167	157
	ERF5	AT5G47230	CGCCGCC	ERF	155	164	166	160
	PUCHI	AT5G18560	CGCCGCC	ERF	155	166	161	165
	LEP	AT5G13910	CGCCGCC	ERF	155	157	157	162
	ERF10	AT1G03800	CGCCGCC	ERF	154	167	152	164
	ERF105	AT5G51190	CGCCGCC	ERF	154	155	160	157
	AT2G33710	AT2G33710	CGCCGCC	ERF	153	164	154	158
	ERF9	AT5G44210	CGCCGCC	ERF	150	160	161	164
Group 2 (GI-CO-FT specific microgravity response)
G2.1	AREB3	AT3G56850	CACGTGGC	bZIP		154	154	150
	bZIP28	AT3G10800	CACGTGGC	bZIP		153	154	151
	ABF1	AT1G49720	CACGTG	bZIP		156	155	151
	ABI5	AT2G36270	CACGTG	bZIP		155	160	162
	CEJ1	AT3G50260	CACCGACA	ERF		154	150	159
	ERF015	AT4G31060	CACCGACA	ERF		152	156	157
	DREB26	AT1G21910	CACCGACA	ERF		151	155	158
	ERF027	AT1G12630	CGCCGACA	ERF		157	153	154
	RAP2.1	At1G46768	CGCCGACA	ERF		156	155	158
	CRF7	AT1G22985	GCCGAC	ERF		152	154
	DREB2F	AT3G57600	CCACCGCC	ERF		153	150
G2.2	RAP2.10	AT4G36900	CGCCGACA	ERF		154
G2.2	ERF4	AT3G15210	CGCCGCC	ERF		150
G2.3	BZR1	AT4G18890	CACGTG	BES1			153	153
	PIF7	AT5G61270	CACGTG	bHLH			153	151
	ABF2	AT1G45249	CACGTGT	bZIP			153	156
	bZIP68	AT1G32150	CACGTG	bZIP			151	154
	ERF039	AT4G16750	CGCCGCC	ERF			153	158
	ERF055	AT1G36060	CGCCGCC	ERF			152	152
	ERF38	AT2G35700	GCCGAC	ERF			151	156
	PIF1	AT2G20180	CACGTG	bHLH			154
	ERF109	AT4G34410	CGCCGCC	ERF			155
	ERF13	AT2G44840	CGCCGCC	ERF			155
	ERF11	AT1G28370	CGCCGCC	ERF			154
	ERF8	AT1G53170	CGCCGCC	ERF			153
	ERF008	AT2G23340	CGCCGCC	ERF			152
	CRF4	AT4G27950	CGCCGCC	ERF			152
	CRF2	AT4G23750	CGCCGCC	ERF			150
	SPL11	AT1G27360	CGTACGG	SBP			150
	BZR2	AT1G19350	CACGTG	BES1				154
	bHLH31	AT1G59640	CACGTG	bHLH				151

^*Information of binding motif bases are from the PlantPAN 4.0 (planpan.itps.ncku.edu.tw/plantpan4).
^**Enrichment score = percentage of the occurrence of a given motif in input genes (total microgravity responsive genes in four genotypes) in comparison with that in random genomic regions. The selected genomic regions were 1000 bp upstream and downstream of the TSS sites. Overrepresentation was determined for cis-motifs (enrichment score>150 and FDR < 0.001) and the Plant Regulomics information database (bioinfo.cemps.ac.cn/plant-regulomics).

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Table 1 List of transcription factors with potential significance to the identified putative cis-regulatory elements among the genes whose expression levels were altered in the WT, gi, 35S:CO and FG in response to spaceflight microgravity

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