Table 1 Mendelian randomization (MR) results of LRRK2-associated proteins for being causal for PD.
All SNPs | Excluding LRRK2 (Chr12) | Cis signal | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Protein | Aptamer | # SNPs | P value | β | # SNPs | P value | β | # SNPs | P value | β |
SDCBP2 | X19261.12 | 1 | 7.3 × 10−21 B | 0.562 | NA | NA | NA | NA | NA | NA |
GPNMB | X8606.39 | 1 | 9.03 × 10−20 B | 0.201 | 1 | 9.03 × 10−20 B | 0.201 | 1 | 9.03 × 10−20 B | 0.201 |
CD68 | X18922.27 | 4 | 7.58 × 10−11 A | 0.219 | 3 | 0.011A | 0.193 | 1 | 4.01 × 10−5 B | 0.270 |
CD68 | X20528.23 | 4 | 0.001A | 0.210 | 3 | 0.220A | 0.183 | NA | NA | NA |
LCT | X9017.58 | 3 | 0.005A | 0.050 | 3 | 0.005A | 0.050 | 1 | 0.006B | 0.050 |
ENTPD1 | X3182.38 | 2 | 0.011A | 0.293 | 1 | 0.793B | 0.022 | NA | NA | NA |
ITGB2 | X12750.9 | 3 | 0.022A | 0.294 | 2 | 0.061A | 0.134 | NA | NA | NA |
GPNMB | X8240.207 | 3 | 0.031A | 0.189 | 2 | 7.99 × 10−7 A | 0.147 | 1 | 9.03 × 10−20 B | 0.153 |
C1QTNF1 | X6304.8 | 2 | 0.041A | 0.293 | 1 | 0.903B | −0.010 | NA | NA | NA |
GPNMB | X5080.131 | 3 | 0.049A | 0.166 | 2 | 7.25 × 10−12 A | 0.132 | 1 | 9.03 × 10−20 B | 0.135 |
HLA-DQA2 | X7757.5 | 2 | 0.967A | −0.013 | 1 | 8.27 × 10−13 B | −0.195 | 1 | 8.27 × 10−13 B | −0.195 |
GRN | X4992.49 | 2 | 0.552A | 0.197 | 1 | 4.78 × 10−5 B | −0.262 | 1 | 4.78 × 10−5 B | −0.262 |
GAA | X9385.4 | 1 | 0.141B | −0.112 | 1 | 0.141B | −0.112 | 1 | 0.141B | −0.112 |
LGALS9 | X9197.4 | 2 | 0.200A | −0.049 | 2 | 0.200A | −0.049 | NA | NA | NA |
TLR3 | X16918.198 | 2 | 0.746A | 0.055 | 1 | 0.382B | −0.018 | 1 | 0.382B | −0.018 |
AGFG2 | X23597.11 | 2 | 0.420A | 0.034 | 2 | 0.420A | 0.034 | 1 | 0.881B | 0.007 |
TMEM106A | X10499.1 | 2 | 0.073A | 0.314 | 1 | 0.436B | 0.053 | NA | NA | NA |
CHIT1 | X3600.2 | 4 | 0.730A | −0.006 | 4 | 0.730A | −0.006 | 1 | 0.803B | 0.004 |
OLR1 | X3636.37 | 2 | 0.992A | −4.63 × 10−4 | 1 | 0.793B | 0.021 | NA | NA | NA |
OLR1 | X7893.19 | 2 | 0.993A | −4.53 × 10−4 | 1 | 0.793B | 0.021 | NA | NA | NA |
GREM2 | X5598.3 | 2 | 0.115A | 1.808 | 1 | 0.828B | −0.058 | NA | NA | NA |