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A novel LC-MS/MS multi-group method for simultaneous determination of antimicrobial residues in legume-based alternative proteins
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  • Published: 03 January 2026

A novel LC-MS/MS multi-group method for simultaneous determination of antimicrobial residues in legume-based alternative proteins

  • Chanita Boonkanon1,
  • Umaporn Uawisetwathana1,2,
  • Nazmi Waesoh1,3,
  • Kawisara Siwarak1,2,
  • Brett Greer1,4,
  • Nitsara Karoonuthaisiri1,2,5,
  • Christopher T. Elliott1,3,5,
  • Robin Philp6,
  • David Bradley7 &
  • …
  • Awanwee Petchkongkaew1,3,5 

npj Science of Food , Article number:  (2026) Cite this article

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  • Chemistry
  • Environmental sciences

Abstract

A novel liquid chromatography-tandem mass spectrometry (LC-MS/MS) method was developed and validated for the simultaneous analysis of three different classes of veterinary drugs—antibiotics, antifungals, and antiparasitics—in legume-based alternative protein samples, e.g. beans, peas, and nuts. The sample preparation process utilized a modified dilute-and-shoot (DnS) technique, achieving recoveries ranging from 72.08 to 108.11% for 18 of the 26 target analytes. The method demonstrated excellent repeatability (n = 12) with relative standard deviations (RSD) between 1.39 and 9.26%, and intermediate precision (over three days, n = 18) ranging from 5.76 to 19.94%. Limits of detection (LOD) and quantification (LOQ) ranged from 0.04 to 15.64 ng.g−1 and 0.10 and 47.40 ng.g−1, respectively, with good linearity. The optimized method was applied to 97 legume samples (primary and processed products) originating from domestic and international markets. Occurrence analysis revealed that all analytes monitored were below the detection limits, suggesting that antimicrobial contamination in legumes-based alternative protein products is low within the Association of Southeast Asian Nations (ASEAN) region.

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Data Availability

The authors declare that all data supporting the findings of this study are available in the paper.

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Acknowledgements

This research has received funding support from the NSRF via the Program Management Unit for Human Resources & Institutional Development, Research and Innovation (PMU-B) [grant number B13F660129], Thailand Science Research and Innovation (TSRI) Fundamental Fund, fiscal year 2026, and the National Science, Research and Innovation Fund, Thailand Science Research and innovation (TSRI) (Grant No.: FFB670076/0337). This research has received funding support from the European Union’s Horizon Europe research and innovation program under the Marie Skłodowska-Curie grant agreement No 101131125 - Mycobeans. Additionally, this study was financially supported by Bualuang Chair Professor Fund (contract number TUBC 08/2022). The authors wish to express their gratitude to the National Center for Genetic Engineering and Biotechnology (BIOTEC) at National Science and Technology Development Agency (NSTDA), Thailand for providing the facilities for the project. The authors also wish to thank the master's student, Miss Warissara Kasikonsunthonchai, for her assistance in quantifying certain studies.

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Authors and Affiliations

  1. International Joint Research Centre on Food Security (IJC-FOODSEC), 111 Thailand Science Park, Phahonyothin Road, Khong Luang, Pathum Thani, 12120, Thailand

    Chanita Boonkanon, Umaporn Uawisetwathana, Nazmi Waesoh, Kawisara Siwarak, Brett Greer, Nitsara Karoonuthaisiri, Christopher T. Elliott & Awanwee Petchkongkaew

  2. National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 111 Thailand Science Park, Phahonyothin Road, Khlong Luang, Pathum Thani, 12120, Thailand

    Umaporn Uawisetwathana, Kawisara Siwarak & Nitsara Karoonuthaisiri

  3. School of Food Science and Technology, Faculty of Science and Technology, Thammasat University (Rangsit Campus), 99 Mhu 18, Phahonyothin Road, Khong Luang, Pathum Thani, 12120, Thailand

    Nazmi Waesoh, Christopher T. Elliott & Awanwee Petchkongkaew

  4. Agri-Food and Biosciences Institute, Veterinary Sciences Division, Stoney Road, Belfast BT4 3SD, Northern Ireland, UK

    Brett Greer

  5. Institute for Global Food Security, School of Biological Sciences, Queens University, 19 Chlorine Gardens, Belfast BT9 5DL, Northern Ireland, UK

    Nitsara Karoonuthaisiri, Christopher T. Elliott & Awanwee Petchkongkaew

  6. Agilent Technologies, Damansara Uptown, Jalan SS 21/37, SS 2, 47400 Petaling Jaya, Selangor, Malaysia

    Robin Philp

  7. Agilent Technologies, Australia Pty Ltd, 679 Springvale Road, Mulgrave, VIC 3170, Australia

    David Bradley

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Contributions

C.B.: Development and analysis, Validation methodology, Data curation, Writing—original draft, Figures Preparation. U.W.: Investigation methodology, Conceptualization, Writing—review and editing. N.W.: Analysis, Software, Data curation. K.S.: Analysis, Data curation. B.G., N.K., R.P., and D.B. Writing—review and editing. C.T.E.: Writing—review and editing, Resources, Supervision. A.P.: Writing—review and editing, Resources, Funding acquisition, Project administration. All authors have read and agreed to the published version of the manuscript.

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Correspondence to Awanwee Petchkongkaew.

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Professor Chris Elliott, one of the co-authors, serves as Co-Editor-in-Chief of npj Science of Food. He was not involved in the peer review process for this manuscript. The remaining authors declare no competing interests.

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Boonkanon, C., Uawisetwathana, U., Waesoh, N. et al. A novel LC-MS/MS multi-group method for simultaneous determination of antimicrobial residues in legume-based alternative proteins. npj Sci Food (2026). https://doi.org/10.1038/s41538-025-00678-3

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  • Received: 31 January 2025

  • Accepted: 16 December 2025

  • Published: 03 January 2026

  • DOI: https://doi.org/10.1038/s41538-025-00678-3

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