Table 1 TOP: BioGRID (version 3.4.164, downloaded Sept. 2018), sorted by number of edges.
From: SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment
Species | ShortName | Common name | Nodes | Edges | Mean degree | Max degree |
|---|---|---|---|---|---|---|
H. sapiens | HS | Human | 17,200 | 282,181 | 32.8 | 2385 |
S. cerevisiae | SC | Baker’s yeast | 5984 | 104,962 | 35.1 | 3603 |
D. melanogaster | DM | Fruit fly | 8728 | 46,364 | 10.6 | 266 |
A. thaliana | AT | Water cress | 9364 | 34,725 | 7.42 | 1341 |
M. musculus | MM | Mouse | 6777 | 18,108 | 5.34 | 1671 |
S. pombe | SP | Fission yeast | 2811 | 8931 | 6.36 | 298 |
C. elegans | CE | Round worm | 3194 | 5572 | 3.49 | 181 |
R. norvegicus | RN | Rat | 2391 | 3554 | 2.97 | 808 |
Code | Description of sequence-based evidence (i.e., disallowed in our predictions) |
|---|---|
IBA | curated transfer amongst related sequences Based on common Ancestry (derived by sequence comparison) |
IEA | Electronic Annotation (strong sequence-based evidence not directly traceable to experimental evidence) |
ISM | Inferred from sequence model |
ISA | Inferred from sequence alignment |
ISO | Inferred from Sequence Orthology |
IGC | Inferred from Genomic Context |
RCA | Inferred from Reviewed Computational Analysis |
ISS | Inferred from Sequence or Structural Similarity |
