Table 1 Comparison of different timepoints of our simulations with single-GC data at an unknown timepoint (datasets (viii) and (ix)).
Dataset | Timepoint (hours) | Clones | Dominant clones | Dominant clones (%) | D50 index | Berger–Parker index | Pielou’s evenness index |
|---|---|---|---|---|---|---|---|
Dataset viii | Unknown, GCs from the same human lymph node | 144 (77–591) | 30 (20–41) | 21 (4.9–28.7) | 0.04 (0.01–0.07) | 0.17 (0.09–0.33) | 0.63 (0.56–0.71) |
Dataset ix | Unknown, gut-associated GCs from several mice | 28 (12–101) | 7 (3–12) | 28.9 (5.9–53.8) | 0.18 (0.05–0.39) | 0.24 (0.1–0.45) | 0.87 (0.68–0.96) |
Simulations | 0 | 0 (0–0) | 0 (0–0) | – | – | – | – |
Simulations | 50 | 96 (86–114) | 54 (45–62) | 56 (49–63) | 0.20 (0.18–0.22) | 0.03 (0.02–0.04) | 0.9 (0.88–0.90) |
Simulations | 100 | 180 (150–198) | 80 (73–89) | 44 (41–53) | 0.22 (0.19–0.23) | 0.03 (0.02–0.05) | 0.93 (0.91–0.94) |
Simulations | 150 | 128 (100–153) | 33 (23–42) | 26 (19–30) | 0.05 (0.02–0.07) | 0.19 (0.09–0.27) | 0.74 (0.62–0.79) |
Simulations | 200 | 59 (43–64) | 18 (12–26) | 35 (27–41) | 0.04 (0.02–0.08) | 0.33 (0.15–0.62) | 0.59 (0.43–0.71) |
Simulations | 250 | 32 (25–41) | 15 (11–24) | 51 (34–70) | 0.06 (0.02–0.12) | 0.39 (0.20–0.82) | 0.58 (0.27–0.77) |
Simulations | 300 | 23 (18–31) | 12 (8–19) | 56 (34–73) | 0.07 (0.04–0.15) | 0.39 (0.19–0.88) | 0.58 (0.20–0.80) |
Simulations | 350 | 17 (15–25) | 11 (6–17) | 67 (35–82) | 0.09 (0.06–0.17) | 0.38 (0.19–0.92) | 0.57 (0.16–0.80) |
Simulations | 400 | 15 (13–21) | 11 (4–15) | 71 (31–100) | 0.11 (0.06–0.2) | 0.40 (0.19–0.94) | 0.59 (0.13–0.81) |
Simulations | 450 | 13 (10–19) | 9 (3–16) | 75 (30–100) | 0.13 (0.07–0.22) | 0.46 (0.17–0.96) | 0.59 (0.09–0.85) |
Simulations | 504 | 11 (4–18) | 9 (2–15) | 78 (50–93) | 0.13 (0.07–0.25) | 0.47 (0.15–0.98) | 0.60 (0.07–0.85) |