Table 1 Targeted HTS analysis showing patterns of virus detection at different virus spiked levels for each participating laboratory
From: Virus detection by short read high throughput sequencing in a high virus low cellular background
Spiked level of reference virus genome (SL)a | Lab ID | Reference Virus | Additional Virus | |||||
|---|---|---|---|---|---|---|---|---|
PCV1 | EBV | FeLV | RSV | Reo1 | PERVb | SMRVc | ||
SL-6 | 2, 3 | + | + | + | + | + | + ( ≈ 4) | + ( ≈ 7) |
SL-5 | 5 | + | + | + | + | + | + ( ≈ 3) | + ( ≈ 6) |
SL-4 | 1–3, 5–7 | + | + | + | + | + | + ( ≈ 2) | + ( ≈ 5) |
4 | + | + | + | + | + | − ( ≈ 2) | + ( ≈ 5) | |
SL-3 | 1, 3, 5 | + | + | + | + | + | + ( ≈ 1) | + ( ≈ 4) |
4, 6 | + | + | + | + | + | − ( ≈ 1) | + ( ≈ 4) | |
SL-2 | 2 | + | + | − | + | − | − ( ≈ 0) | + ( ≈ 3) |
3 | − | + | + | + | − | + ( ≈ 0) | + ( ≈ 3) | |
4 | − | + | − | − | − | − ( ≈ 0) | + ( ≈ 3) | |
5 | + | + | + | + | + | − ( ≈ 0) | + ( ≈ 3) | |
7 | + | + | + | − | + | + ( ≈ 0) | + ( ≈ 3) | |
SL-1 | 5 | − | + | + | − | + | − (≈ -1) | + ( ≈ 2) |