Table 3 HTS detection of additional viral sequences by non-targeted analysisa
From: Virus detection by short read high throughput sequencing in a high virus low cellular background
Related to background virus Adenovirus 5 | Laboratory ID |
|---|---|
Pan troglodytes adenovirus | 1 |
Unidentified adenovirus | 6 |
Untyped Human adenovirus | 6 |
Untyped Human mastadenovirus | 6 |
Related to spiked viruses FeLV or SMRV | |
Baboon endogenous virus | 1, 7 |
Primate T-lymphotropic virus 1 | 3 |
Macaca mulatta type C retrovirus | 1, 3 |
Mason-Pfizer monkey virus | 1, 3, 5, 6 |
Murine AIDS virus-related provirus | 6 |
Murine leukemia virus | 3, 6, 7 |
Murine leukemia-related retroviruses | 6 |
Mus musculus mobilized endogenous polytropic provirus | 3 |
Simian retrovirus 8 | 7 |
Related to viral sequences present in host cell used for virus propagation | |
Alphapapillomavirus 12 | 1 |
Alphapapillomavirus 7 | 1, 5 |
Human papillomavirus | 6, 7 |
Human polyomavirus 5 | 7 |
Due to ERVs in host cell DNA | |
Chlorocebus aethiops isolate CA_NCAI14 retrotransposons HERVIP10F_ints, LTR8, and HERVIP10F_int, complete sequence | 1 |
Human endogenous retrovirus | 1, 6 |
Human endogenous retrovirus H | 3 |
Human endogenous retrovirus K | 1, 3, 6 |
Due to bovine serum | |
Ungulate copiparvovirus 5 | 5, 7 |
Other viral sequences | |
Adeno-associated dependoparvovirus B | 1 |
Autographa californica multiple nucleopolyhedrovirus | 7 |
Blacklegged tick picorna-like virus 2 | 1 |
Bovine alphaherpesvirus 5 | 6 |
CRESS virus sp. | 5 |
CRESS virus sp. ctin15 | 5 |
Crimean-Congo hemorrhagic fever orthonairovirus | 6 |
Guanarito mammarenavirus | 1, 3 |
Human alphaherpesvirus 1 | 6 |
Hepatitis B virus | 1 |
Hubei tombus-like virus 8 | 4 |
Human immunodeficiency virus 1 | 1, 4 |
Lassa mammarenavirus | 3 |
Norway luteo-like virus 4 | 5 |
Paramecium bursaria Chlorella virus A1 | 5 |
Paramecium bursaria Chlorella virus CVB-1 | 5 |
Pepper mild mottle virus | 3 |
Saccharomyces cerevisiae killer virus M1 | 1 |
Semliki Forest virus | 1 |
Shamonda orthobunyavirus | 3 |
Sindbis virus | 3 |
Uncultured virus | 3, 5 |
Vaccinia virus | 2 |
