Extended Data Fig. 8: Plots of free energy surfaces from metadynamics simulations: the effect of a P-site N-terminal formyl group. | Nature Chemistry

Extended Data Fig. 8: Plots of free energy surfaces from metadynamics simulations: the effect of a P-site N-terminal formyl group.

From: Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates

Extended Data Fig. 8

Free energy surfaces (FES) (kcal/mol) of the 30 Å RRM model containing an P-site tRNA acylated with a, c, e, Met or b, d, f, fMet plotted along the Bürgi–Dunitz angle αBD and Nα–Csp2 distance collective variables. A-site tRNAs were acylated with a, b Met 1; c, d, aminobenzoic acid 2; e, f, aminobenzoic acid 4.

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