Extended Data Fig. 7: Human transcriptome response assessed with different parameters of batch effect correction. | Nature Microbiology

Extended Data Fig. 7: Human transcriptome response assessed with different parameters of batch effect correction.

From: Candida pathogens induce protective mitochondria-associated type I interferon signalling and a damage-driven response in vaginal epithelial cells

Extended Data Fig. 7: Human transcriptome response assessed with different parameters of batch effect correction.

PCA plots of human samples interacting with fungal cells obtained using k = 0, 1, 2, 3 values of RUVseq package for batch effect correction. Labels of the data points correspond to sample identifiers, where ‘reseq’ indicates that the sample was sequenced more than once (see Supplementary Table 1 for details). ‘non-viable’ indicates host samples interacting with non-viable fungal cells; ‘ece1Δ/Δ’ indicates host samples interacting with C. albicans ece1Δ/Δ.

Back to article page