Extended Data Fig. 2: Detailed subtree of SS14-lineage. | Nature Microbiology

Extended Data Fig. 2: Detailed subtree of SS14-lineage.

From: Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis

Extended Data Fig. 2

Recombination masked WGS phylogeny, showing the SS14-lineage and sublineages. The low diversity globally distributed sublineage 1 has been collapsed to enable visualization of the remaining sublineages. Tip points are coloured by sublineage, and coloured strips show sublineage and country. Blue triangle indicates collapsed Nichols-lineage, pink triangle indicates collapsed sublineage 1. Two samples close to the root of the common SS14-lineage clades were clustered as sublineage 1, and are shown. Note that sublineage 6 diverges from a node close to the root of TPA, and appears on the SS14 side in this midpoint rooted tree.

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