Extended Data Fig. 5: The distribution of closely related isolates (separated by 100 cgSNPS, n = 660) based on core genome SNPs (cgSNPs). | Nature Microbiology

Extended Data Fig. 5: The distribution of closely related isolates (separated by 100 cgSNPS, n = 660) based on core genome SNPs (cgSNPs).

From: Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape

Extended Data Fig. 5

An alignment of 399,673 aligned nucleotide positions were used. Each of these core SNP positions were conserved in at least 99.8% of isolates (1335/1338). The vertical dashed black line indicates the sharing threshold (10 cgSNPs).

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