Extended Data Fig. 8: k-mer genome containment scores of Illumina sequencing reads against the four haplotypes.
From: Nuclear exchange generates population diversity in the wheat leaf rust pathogen Puccinia triticina
Identity is the percentage of bases that are shared between the genome and the sequencing reads. Shared k-mers is the percentage of k-mers shared between the genome and the sequencing reads. Two red lines indicate above which thresholds we consider a haplotype genome to be fully contained in the sequencing reads of an isolate (identity >= 99.99%, shared k-mers >= 99.5%). The averages are shown for clades.
