Fig. 3: Phylogenetic tree with the diploid genome of 19NSW04 (BC) as the reference.
From: Nuclear exchange generates population diversity in the wheat leaf rust pathogen Puccinia triticina
A maximum-likelihood tree was generated from 175,974 bi-allelic SNPs. Isolates from the five Australian Pt clades (AU1–AU5), seven North American clades (NA1–NA7) or Europe are indicated by colour according to the legend inset. Five isolates are unassigned to clades, that is, Pt_ISR_850 (Aegilops speltoides, outgroup), 03VA190 (unassigned in ref. 34) and three others which are in disagreement with the clade assignment given in ref. 34. Pt isolates with fully phased haplotype genome references are highlighted in grey. Bootstrap values over 80% are indicated with blue circles. The year of collection for each isolate is shown next to the blue bars which indicate time passed since 1950.
