Table 1 k-mer genome containment scores against sequencing reads of various Pt isolates and clades
From: Nuclear exchange generates population diversity in the wheat leaf rust pathogen Puccinia triticina
Pt isolate/clades | k-mer identity (%) / shared k-mers (%) | ||||
|---|---|---|---|---|---|
19ACT06 haplotype A | 19NSW04 haplotype B | 19NSW04 haplotype C | 20QLD87 haplotype D | Haplotypes present | |
AU1 | 100 / 99.9 | 100 / 99.9 | 99.82 / 94.4 | 99.89 / 96.5 | A,B |
AU2 | 99.82 / 94.4 | 100 / 100 | 100 / 100 | 99.91 / 97.1 | B,C |
20QLD87 (AU3) | 99.81 / 94.0 | 99.88 / 96.2 | 100 / 100 | 100 / 100 | C,D |
AU5 | 99.99 / 99.7 | 99.87 / 96.0 | 99.87 / 95.9 | 99.88 / 96.1 | A |
AU4 | 99.87 / 95.8 | 99.87 / 95.9 | 99.87 / 95.8 | 99.90 / 96.9 | Unidentified |
09TUR23_1 | 99.99 / 99.8 | 99.99 / 99.9 | 99.90 / 96.9 | 99.94 / 98.1 | A,B |
FR56 | 99.99 / 99.7 | 99.93 / 97.8 | 99.90 / 97.0 | 99.92 / 97.4 | A |
CZ10_09 | 99.99 / 99.7 | 99.95 / 98.3 | 99.92 / 97.3 | 99.94 / 98.2 | A |
NA1 | 99.85 / 95.5 | 99.91 / 97.2 | 99.91 / 97.3 | 99.94 / 98.1 | Unidentified |
NA2 | 99.88 / 96.1 | 99.89 / 96.4 | 99.93 / 97.8 | 99.92 / 97.4 | Unidentified |
NA3 | 99.80 / 93.7 | 99.87 / 96.0 | 99.99 / 99.8 | 99.99 / 99.7 | C,D |
NA4 | 99.74 / 92.1 | 99.88 / 96.3 | 99.78 / 93.2 | 99.99 / 99.6 | D |
NA5 branch 1 | 99.80 / 93.9 | 99.88 / 96.1 | 99.90 / 97.0 | 99.99 / 99.6 | D |
NA5 branch 2 | 99.83 / 94.5 | 99.89 / 96.5 | 99.93 / 97.7 | 99.99 / 99.6 | D |
NA6 | 99.81 / 94.1 | 99.87 / 96.0 | 99.86 / 95.6 | 99.99 / 99.6 | D |
NA7 | 99.79 / 93.6 | 99.86 / 95.7 | 99.99 / 99.5 | 99.91 / 97.3 | C |
Durum | 99.78 / 93.1 | 99.66 / 89.9 | 99.77 / 92.8 | 99.67 / 90.0 | Unidentified |
Middle East (ISR173B) | 99.79 / 93.6 | 99.91 / 97.0 | 99.78 / 93.0 | 99.86 / 95.7 | Unidentified |
Other European isolates | 99.87 / 96.1 | 99.92 / 97.6 | 99.85 / 95.5 | 99.89 / 96.4 | Unidentified |
