Extended Data Fig. 10: Genome specific Go-term enrichment comparisons for 1-1 orthologues.

GoTerm enrichment comparisons of 1-1 orthologues between haplotype specific genes upregulated in brachypodium vs lotus and chicory vs carrot comparisons in each strain. Brachypodium vs lotus comparisons are shown in the upper plots, whereas chicory vs carrot comparisons are shown in lower plots. Each bar represents percentage of upregulated genes for the same GoTerm in each haplotype. Only GoTerms shared among all haplotype-specific upregulated genes are shown to highlight the respective functional contribution of each haplotype across hosts and strains. Data based on genes differentially expressed with a significance level of at least Padj < 0.01 (P-values produced using Wald test and are adjusted by Benjamini and Hochberg method).