Fig. 2: Overview of the MAGs recovered from the sequenced samples. | Nature Microbiology

Fig. 2: Overview of the MAGs recovered from the sequenced samples.

From: Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats

Fig. 2

a, Aggregated MAG counts by MAG contiguity, MAG quality rankings before and after MAG dereplication, together with MAG taxonomy rankings according to GTDB R220 classification. ‘Single-contig’ refers to MAGs that are composed of one contig, which was not reported as circular by the assembler. b, Species-level (>95% ANI) rarefaction curve for HQ and MQ MAGs recovered in this study. The solid line depicts the rarefaction (interpolation), while the dotted line shows the extrapolation of the curve. c, Distribution of dereplicated MAG size values in Mbp, grouped by MAG quality. d, Distribution of dereplicated MAG coverage values. e, Contig N50 for dereplicated MAGs in kbp. f, Coding density values for dereplicated MAGs. For the boxplots, results are shown for the dereplicated HQ (n = 4,894) and MQ (n = 10,746) MAGs; the central line represents the median, the hinges correspond to the 25th and 75th percentiles, the whiskers extend up to 1.5 times the IQR, and individual outliers are shown. g, Percentage coverage of Microflora Danica core genera27 at different sample metadata description levels by the recovered MAGs.

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