Extended Data Fig. 7: Molecular dynamics simulation workflow.
From: Molecular organization of the New World arenavirus spike glycoprotein complex
Workflow for molecular dynamics simulation of membrane-embedded JUNV and MACV GPC. Membrane-embedded JUNV GPC is shown, with Na+ ions shown as purple spheres and Cl− ions shown as green spheres. Abbreviations are as follows: DPPC, 1,2-dipalmitoyl-sn-glycero-3-phosphocholine; DPPE, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine; DPPS, 1,2-dipalmitoyl-sn-glycero-3-phospho-L-serine; PSM, palmitoylsphingomyelin; POPC, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine; POPE, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine; POPS, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoserine. RMSD: root-mean-square deviation. See Methods and Supplementary Table 3 for additional information.
