Table 1 Proportions and counts of the number of isolates of each serotype and non-typable isolates in the Maela collection and within pneumonia and non-pneumonia cases

From: Genetic population structure of Haemophilus influenzae at local and global scales

Serotype

Maela collection (n = 3970)

Host-deduplicated isolates (n = 3210)

 

Number of isolates (percentage of total, 3,970)

Pneumonia cases (percentage of total, 613)

Non-pneumonia cases (percentage of total, 3,357)

Number of isolates (percentage of total, 3,210)

Pneumonia cases (percentage of total, 523)

Non-pneumonia cases (percentage of total, 2,687)

a

15 (0.4%)

0

15 (0.4%)

11 (0.34%)

0

11 (0.4%)

b

208 (5.2%)

19 (3.1%)

189 (5.6%)

154 (4.8%)

15 (2.9%)

139 (5.2%)

c

6 (0.2%)

2 (0.3%)

4 (0.1%)

6 (0.19%)

2 (0.4%)

4 (0.1%)

d

5 (0.1%)

2 (0.3%)

3 (0.1%)

5 (0.16%)

2 (0.4%)

3 (0.1%)

e

31 (0.8%)

5 (0.8%)

26 (0.8%)

26 (0.81%)

4 (0.8%)

22 (0.8%)

f

36 (0.9%)

2 (0.3%)

34 (1.0%)

31 (0.97%)

2 (0.4%)

29 (1.1%)

Non-typeable

3,669 (92.4%)

583 (95.1%)

3,086 (91.9%)

2,977 (92.7%)

498 (95.2%)

2,479 (92.3%)

  1. The serotypes were determined with both agglutination and in silico using sequence data (Methods). Owing to the longitudinal nature of the sampling, host deduplication was used to remove isolates which were collected from the same host on consecutive sampling times and were likely to be clonally related (Methods).