Abstract
Molecularly targeted agents and immune checkpoint inhibitors (ICIs) are transforming the treatment landscape for patients with advanced-stage urothelial carcinoma (aUC), although trials testing these novel agents have shown mixed results. In this context, the identification of biomarkers has seen limited success: while activating mutations in FGFR3 are now established as an actionable biomarker to guide treatment with FGFR inhibitors, PD-L1 expression has shown inconsistent value as a predictive biomarker of response to ICIs. The identification of prognostic and predictive biomarkers for ICIs, antibody–drug conjugates and targeted therapies is an active area of research; promising candidates include tumour mutational burden and HER2 overexpression. In the past few years, circulating tumour DNA has emerged as a minimally invasive biomarker, with increasing data supporting its prognostic value and utility for monitoring clinical responses. In this Review, we address these developments and discuss biomarkers that could have clinical utility in patients with aUC.
Key points
-
The identification of predictive biomarkers in patients with advanced-stage urothelial carcinoma (aUC) has been hampered by the variability of the assessment methods. Standardizing the assessment of these biomarkers will help to overcome these heterogeneous results.
-
Activating mutations in FGFR3 are now an established biomarker guiding the choice of targeted therapies for patients with aUC. HER2 is becoming an increasingly important biomarker in this setting.
-
In patients with aUC receiving immune checkpoint inhibitors, PD-L1 expression has shown inconsistent value as a predictive biomarker and thus, standardized, robust validation methods are needed to avoid the interpretation errors from previous studies. Experimental biomarkers, such as tumour mutational burden, have shown promise in this setting but need validation.
-
Integrating data from several biomarkers using artificial intelligence and spatial analysis could improve the predictive value of conventional tissue-based approaches focusing on a single biomarker.
-
Circulating tumour DNA offers minimally invasive monitoring of treatment response and recurrence risk.
This is a preview of subscription content, access via your institution
Access options
Access Nature and 54 other Nature Portfolio journals
Get Nature+, our best-value online-access subscription
$32.99 / 30 days
cancel any time
Subscribe to this journal
Receive 12 print issues and online access
$189.00 per year
only $15.75 per issue
Buy this article
- Purchase on SpringerLink
- Instant access to the full article PDF.
USD 39.95
Prices may be subject to local taxes which are calculated during checkout
Similar content being viewed by others
References
International Agency for Research on Cancer. Cancer tomorrow. IARC https://gco.iarc.who.int/tomorrow/en/dataviz/isotype?cancers=30&single_unit=50000&years=2025&types=1 (2025).
Guo, C. C. et al. Molecular profile of bladder cancer progression to clinically aggressive subtypes. Nat. Rev. Urol. 21, 391–405 (2024).
Galsky, M. D. et al. Adjuvant nivolumab in high-risk muscle-invasive urothelial carcinoma: expanded efficacy from Checkmate 274. J. Clin. Oncol. 43, 15–21 (2025).
Powles, T. et al. Perioperative durvalumab with neoadjuvant chemotherapy in operable bladder cancer. N. Engl. J. Med. 391, 1773–1786 (2024).
Powles, T. et al. Avelumab maintenance therapy for advanced or metastatic urothelial carcinoma. N. Engl. J. Med. 383, 1218–1230 (2020).
Powles, T. et al. Enfortumab vedotin and pembrolizumab in untreated advanced urothelial cancer. N. Engl. J. Med. 390, 875–888 (2024).
Turner, N. & Grose, R. Fibroblast growth factor signalling: from development to cancer. Nat. Rev. Cancer 10, 116–129 (2010).
Li, R. et al. FGFR inhibition in urothelial carcinoma. Eur. Urol. 87, 110–122 (2025).
Sternberg, C. N. et al. FORT-1: phase II/III study of rogaratinib versus chemotherapy in patients with locally advanced or metastatic urothelial carcinoma selected based on FGFR1/3 mRNA expression. J. Clin. Oncol. 41, 629–639 (2022).
Knowles, M. A. & Hurst, C. D. Molecular biology of bladder cancer: new insights into pathogenesis and clinical diversity. Nat. Rev. Cancer 15, 25–41 (2015).
Billerey, C. et al. Frequent FGFR3 mutations in papillary non-invasive bladder (PTa) tumors. Am. J. Pathol. 158, 1955–1959 (2001).
Tomlinson, D. C., Hurst, C. D. & Knowles, M. A. Knockdown by shRNA identifies S249C mutant FGFR3 as a potential therapeutic target in bladder cancer. Oncogene 26, 5889–5899 (2007).
Pal, S. K. et al. Infigratinib versus placebo in patients with resected urothelial cancer (UC) bearing FGFR3 mutation or fusion: primary DFS analysis from the phase 3, randomized PROOF302 study [abstract]. J. Clin. Oncol. 42, 629 (2024).
Ascione, C. M. et al. Role of FGFR3 in bladder cancer: treatment landscape and future challenges. Cancer Treat. Rev. 115, 102530 (2023).
Loriot, Y. et al. Erdafitinib in locally advanced or metastatic urothelial carcinoma. N. Engl. J. Med. 381, 338–348 (2019).
Siefker-Radtke, A. O. et al. Erdafitinib versus pembrolizumab in pretreated patients with advanced or metastatic urothelial cancer with select FGFR alterations: cohort 2 of the randomized phase III THOR trial. Ann. Oncol. 35, 107–117 (2024).
Grivas, P. et al. Avelumab first-line maintenance therapy for advanced urothelial carcinoma: comprehensive clinical subgroup analyses from the JAVELIN Bladder 100 phase 3 trial. Eur. Urol. 84, 95–108 (2023).
Powles, T. et al. Avelumab maintenance in advanced urothelial carcinoma: biomarker analysis of the phase 3 JAVELIN Bladder 100 trial. Nat. Med. 27, 2200–2211 (2021).
Siefker-Radtke, A. O. et al. Erdafitinib (ERDA) vs ERDA plus cetrelimab (ERDA + CET) for patients (pts) with metastatic urothelial carcinoma (mUC) and fibroblast growth factor receptor alterations (FGFRa): Final results from the phase 2 Norse study [abstract]. J. Clin. Oncol. 41, 4504 (2023).
Iyer, G. et al. A first-in-human phase 1 study of LY3866288 (LOXO-435), a potent, highly isoform-selective FGFR3 inhibitor (FGFR3i) in advanced solid tumors with FGFR3 alterations: initial results from FORAGER-1 [abstract]. J. Clin. Oncol. 43, 662 (2025).
Vandekerkhove, G. et al. Plasma ctDNA is a tumor tissue surrogate and enables clinical-genomic stratification of metastatic bladder cancer. Nat. Commun. 12, 184 (2021).
Helal, C. et al. Clinical utility of plasma ctDNA sequencing in metastatic urothelial cancer. Eur. J. Cancer 195, 113368 (2023).
Barata, P. C. et al. Next-generation sequencing (NGS) of cell-free circulating tumor DNA and tumor tissue in patients with advanced urothelial cancer: a pilot assessment of concordance. Ann. Oncol. 28, 2458–2463 (2017).
Powles, T. et al. An adaptive, biomarker-directed platform study of durvalumab in combination with targeted therapies in advanced urothelial cancer. Nat. Med. 27, 793–801 (2021).
Nawaf, C. et al. Circulating tumor DNA based minimal residual disease detection and adjuvant treatment decision-making for muscle-invasive bladder cancer guided by modern clinical trials. Transl. Oncol. 37, 101763 (2023).
Tomlinson, D. C., Lamont, F. R., Shnyder, S. D. & Knowles, M. A. Fibroblast growth factor receptor 1 promotes proliferation and survival via activation of the mitogen-activated protein kinase pathway in bladder cancer. Cancer Res. 69, 4613–4620 (2009).
Heath, C. & Cross, N. C. P. Critical role of STAT5 activation in transformation mediated by ZNF198-FGFR1. J. Biol. Chem. 279, 6666–6673 (2004).
Lim, S. et al. Fibroblast growth factor receptor 1 overexpression is associated with poor survival in patients with resected muscle invasive urothelial carcinoma. Yonsei Med. J. 57, 831–839 (2016).
Murugesan, K. et al. Pan-tumor landscape of fibroblast growth factor receptor 1-4 genomic alterations. ESMO Open 7, 100641 (2022).
Loriot, Y. et al. Erdafitinib or chemotherapy in advanced or metastatic urothelial carcinoma. N. Engl. J. Med. 389, 1961–1971 (2023).
Helsten, T., Schwaederle, M. & Kurzrock, R. Fibroblast growth factor receptor signaling in hereditary and neoplastic disease: biologic and clinical implications. Cancer Metastasis Rev. 34, 479–496 (2015).
Goetz, R. & Mohammadi, M. Exploring mechanisms of FGF signalling through the lens of structural biology. Nat. Rev. Mol. Cell Biol. 14, 166–180 (2013).
Lang, L. & Teng, Y. Fibroblast growth factor receptor 4 targeting in cancer: new insights into mechanisms and therapeutic strategies. Cell 8, 31 (2019).
Zhao, J. et al. Prognostic role of HER2 expression in bladder cancer: a systematic review and meta-analysis. Int. Urol. Nephrol. 47, 87–94 (2015).
Yan, M. et al. HER2 expression status in diverse cancers: review of results from 37,992 patients. Cancer Metastasis Rev. 34, 157–164 (2015).
Krüger, S. et al. Overexpression of c-erbB-2 oncoprotein in muscle-invasive bladder carcinoma: relationship with gene amplification, clinicopathological parameters and prognostic outcome. Int. J. Oncol. 21, 981–987 (2002).
Patelli, G. et al. The evolving panorama of HER2-targeted treatments in metastatic urothelial cancer: a systematic review and future perspectives. Cancer Treat. Rev. 104, 102351 (2022).
Sanguedolce, F. et al. HER2 expression in bladder cancer: a focused view on its diagnostic, prognostic, and predictive role. Int. J. Mol. Sci. 24, 3720 (2023).
Raggi, D. et al. HER2 and urothelial carcinoma: current understanding and future directions. Nat. Rev. Urol. https://doi.org/10.1038/s41585-025-01075-x (2025).
Powles, T. et al. Phase III, double-blind, randomized trial that compared maintenance lapatinib versus placebo after first-line chemotherapy in patients with human epidermal growth factor receptor 1/2-positive metastatic bladder cancer. J. Clin. Oncol. 35, 48–55 (2017).
Meric-Bernstam, F. et al. Efficacy and safety of trastuzumab deruxtecan in patients with HER2-expressing solid tumors: primary results from the DESTINY-PanTumor02 phase II trial. J. Clin. Oncol. 42, 47–58 (2024).
Sheng, X. et al. Preliminary results of a phase Ib/II combination study of RC48-ADC, a novel humanized anti-HER2 antibody-drug conjugate (ADC) with toripalimab, a humanized IgG4 mAb against programmed death-1 (PD-1) in patients with locally advanced or metastatic urothelial carcinoma [abstract]. J. Clin. Oncol. 40, 4518 (2022).
Sheng, X. et al. Efficacy and safety of disitamab vedotin in patients with human epidermal growth factor receptor 2-positive locally advanced or metastatic urothelial carcinoma: a combined analysis of two phase II clinical trials. J. Clin. Oncol. 42, 1391–1402 (2024).
Zhou, L. et al. Disitamab vedotin plus toripalimab in patients with locally advanced or metastatic urothelial carcinoma (RC48-C014): a phase Ib/II dose-escalation and dose-expansion study. Ann. Oncol. 36, 331–339 (2025).
Sheng, X. et al. Disitamab vedotin plus toripalimab in HER2-expressing advanced urothelial cancer. N. Engl. J. Med. https://doi.org/10.1056/NEJMoa2511648 (2025).
Ma, Y. et al. BL-B01D1, a first-in-class EGFR-HER3 bispecific antibody-drug conjugate, in patients with locally advanced or metastatic solid tumours: a first-in-human, open-label, multicentre, phase 1 study. Lancet Oncol. 25, 901–911 (2024).
Ye, D. et al. BL-B01D1, an EGFR x HER3 bispecific antibody-drug conjugate (ADC), in patients with locally advanced or metastatic urothelial carcinoma (UC) [abstract 1959O]. Ann. Oncol. 35, S1133 (2024).
Sethy, C., Goutam, K., Das, B., Dash, S. R. & Kundu, C. N. Nectin-4 promotes lymphangiogenesis and lymphatic metastasis in breast cancer by regulating CXCR4-LYVE-1 axis. Vasc. Pharmacol. 140, 106865 (2021).
Yu, E. Y. et al. Enfortumab vedotin after PD-1 or PD-L1 inhibitors in cisplatin-ineligible patients with advanced urothelial carcinoma (EV-201): a multicentre, single-arm, phase 2 trial. Lancet Oncol. 22, 872–882 (2021).
US Food and Drug Administration. FDA grants accelerated approval to enfortumab vedotin-ejfv for metastatic urothelial cancer. FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-grants-accelerated-approval-enfortumab-vedotin-ejfv-metastatic-urothelial-cancer (2019).
US Food and Drug Administration. FDA approves enfortumab vedotin-ejfv with pembrolizumab for locally advanced or metastatic urothelial cancer. FDA https://www.fda.gov/drugs/resources-information-approved-drugs/fda-approves-enfortumab-vedotin-ejfv-pembrolizumab-locally-advanced-or-metastatic-urothelial-cancer (2023).
Powles, T. B. et al. EV-302: Exploratory analysis of nectin-4 expression and response to 1 L enfortumab vedotin (EV) + pembrolizumab (P) in previously untreated locally advanced or metastatic urothelial cancer (la/mUC) [abstract 1966MO]. Ann. Oncol. 35, S1137–S1138 (2024).
Riester, M. et al. Integrative analysis of 1q23.3 copy-number gain in metastatic urothelial carcinoma. Clin. Cancer Res. 20, 1873–1883 (2014).
Nakauma-González, J. A. et al. Comprehensive molecular characterization reveals genomic and transcriptomic subtypes of metastatic urothelial carcinoma. Eur. Urol. 81, 331–336 (2022).
Klümper, N. et al. NECTIN4 amplification is frequent in solid tumors and predicts enfortumab vedotin response in metastatic urothelial cancer. J. Clin. Oncol. 42, 2446–2455 (2024).
Klümper, N. et al. Membranous expression of target protein is required for ADC response in urothelial cancer. Eur. Urol. 87, e34–e36 (2025).
Goldenberg, D. M., Stein, R. & Sharkey, R. M. The emergence of trophoblast cell-surface antigen 2 (TROP-2) as a novel cancer target. Oncotarget 9, 28989–29006 (2018).
Loriot, Y. et al. TROPHY-U-01, a phase II open-label study of sacituzumab govitecan in patients with metastatic urothelial carcinoma progressing after platinum-based chemotherapy and checkpoint inhibitors: updated safety and efficacy outcomes. Ann. Oncol. 35, 392–401 (2024).
Powles, T. et al. Sacituzumab govitecan in advanced urothelial carcinoma: TROPiCS-04, a phase III randomized trial. Ann. Oncol. 36, 561–571 (2025).
Loriot, Y. et al. Sacituzumab govitecan demonstrates efficacy across tumor Trop-2 expression levels in patients with advanced urothelial cancer. Clin. Cancer Res. 30, 3179–3188 (2024).
Meric-Bernstam, F. et al. Datopotamab deruxtecan (Dato-DXd) in locally advanced/metastatic urothelial cancer: updated results from the phase 1 TROPIONPanTumor01 study [abstract]. J. Clin. Oncol. 43, 663 (2025).
Ye, D. et al. Efficacy and safety of sacituzumab tirumotecan monotherapy in patients with advanced urothelial carcinoma who progressed on or after prior anti-cancer therapies: report from the phase 1/2 MK-2870-001 study [abstract]. J. Clin. Oncol. 43, 796 (2025).
AstraZeneca. Novel computational pathology-based TROP2 biomarker for datopotamab deruxtecan was predictive of clinical outcomes in patients with non-small cell lung cancer in TROPION-Lung01 Phase III trial. AstraZeneca https://www.astrazeneca.com/media-centre/press-releases/2024/novel-computational-pathology-based-trop2-biomarker-for-dato-dxd-was-predictive-of-clinical-outcomes-in-patients-with-nsclc-in-tropion-lung01-phase-iii-trial.html (2024).
Crabb, S. J. et al. A randomized, double blind, biomarker selected, phase II clinical trial of maintenance PARP inhibition following chemotherapy for metastatic urothelial carcinoma (mUC): final analysis of the ATLANTIS rucaparib arm [abstract]. J. Clin. Oncol. 40, 436 (2022).
Grivas, P. et al. Rucaparib for recurrent, locally advanced, or metastatic urothelial carcinoma (mUC): Results from ATLAS, a phase II open-label trial [abstract]. J. Clin. Oncol. 38, 440 (2020).
Rosenberg, J. E. et al. Durvalumab plus olaparib in previously untreated, platinum-ineligible patients with metastatic urothelial carcinoma: a multicenter, randomized, phase II trial (BAYOU). J. Clin. Oncol. 41, 43–53 (2023).
Shariat, S. F. et al. Association of angiogenesis related markers with bladder cancer outcomes and other molecular markers. J. Urol. 183, 1744–1750 (2010).
Narayanan, S. & Srinivas, S. Incorporating VEGF-targeted therapy in advanced urothelial cancer. Ther. Adv. Med. Oncol. 9, 33–45 (2016).
Font, A. et al. Phase II trial of afatinib in patients with advanced urothelial carcinoma with genetic alterations in ERBB1-3 (LUX-Bladder 1). Br. J. Cancer 130, 434–441 (2024).
Petrylak, D. P. et al. Ramucirumab plus docetaxel versus placebo plus docetaxel in patients with locally advanced or metastatic urothelial carcinoma after platinum-based therapy (RANGE): overall survival and updated results of a randomised, double-blind, phase 3 trial. Lancet Oncol. 21, 105–120 (2020).
Vilaseca, A. et al. First safety and efficacy results of the Tar-210 erdafitinib intravesical delivery system in patients with non–muscle-invasive bladder cancer with select FGFR alterations [abstract PD48-02]. J. Urol. 211, e987–e988 (2024).
Zhou, Y. et al. Tumor biomarkers for diagnosis, prognosis and targeted therapy. Signal. Transduct. Target. Ther. 9, 132 (2024).
Mellman, I., Chen, D. S., Powles, T. & Turley, S. J. The cancer-immunity cycle: indication, genotype, and immunotype. Immunity 56, 2188–2205 (2023).
van der Heijden, M. S. et al. Atezolizumab versus chemotherapy in patients with platinum-treated locally advanced or metastatic urothelial carcinoma: a long-term overall survival and safety update from the phase 3 imvigor211 clinical trial. Eur. Urol. 80, 7–11 (2021).
Powles, T. et al. Avelumab first-line maintenance for advanced urothelial carcinoma: results from the JAVELIN bladder 100 trial after ≥2 years of follow-up. J. Clin. Oncol. 41, 3486–3492 (2023).
Powles, T. et al. Durvalumab alone and durvalumab plus tremelimumab versus chemotherapy in previously untreated patients with unresectable, locally advanced or metastatic urothelial carcinoma (DANUBE): a randomised, open-label, multicentre, phase 3 trial. Lancet Oncol. 21, 1574–1588 (2020).
Powles, T. et al. Pembrolizumab for advanced urothelial carcinoma: exploratory ctDNA biomarker analyses of the KEYNOTE-361 phase 3 trial. Nat. Med. https://doi.org/10.1038/s41591-024-03091-7 (2024).
Bristol Myers Squibb. Bristol Myers Squibb provides update on CheckMate -901 trial evaluating Opdivo (nivolumab) plus Yervoy (ipilimumab) as first-line treatment for patients with unresectable or metastatic urothelial carcinoma. Bristol Myers Squibb https://news.bms.com/news/corporate-financial/2022/Bristol-Myers-Squibb-Provides-Update-on-CheckMate--901-Trial-Evaluating-Opdivo-nivolumab-Plus-Yervoy-ipilimumab-as-First-Line-Treatment-for-Patients-with-Unresectable-or-Metastatic-Urothelial-Carcinoma/default.aspx (2022).
Galsky, M. D. et al. Atezolizumab with or without chemotherapy in metastatic urothelial cancer (IMvigor130): a multicentre, randomised, placebo-controlled phase 3 trial. Lancet 395, 1547–1557 (2020).
Powles, T. et al. Updated overall survival by circulating tumor DNA status from the phase 3 IMvigor010 trial: adjuvant atezolizumab versus observation in muscle-invasive urothelial carcinoma. Eur. Urol. 85, 114–122 (2024).
van der Heijden, M. S. et al. Nivolumab plus gemcitabine–cisplatin in advanced urothelial carcinoma. N. Engl. J. Med. 389, 1778–1789 (2023).
Petrylak, D. P. et al. Atezolizumab (MPDL3280A) monotherapy for patients with metastatic urothelial cancer long-term outcomes from a phase 1 study. JAMA Oncol. 4, 537–544 (2018).
Balar, A. V. et al. Atezolizumab as first-line treatment in cisplatin-ineligible patients with locally advanced and metastatic urothelial carcinoma: a single-arm, multicentre, phase 2 trial. Lancet 389, 67–76 (2017).
Fradet, Y. et al. Randomized phase III KEYNOTE-045 trial of pembrolizumab versus paclitaxel, docetaxel, or vinflunine in recurrent advanced urothelial cancer: results of >2 years of follow-up. Ann. Oncol. 30, 970–976 (2019).
Bajorin, D. F. et al. Adjuvant nivolumab versus placebo in muscle-invasive urothelial carcinoma. N. Engl. J. Med. 384, 2102–2114 (2021).
Van Der Heijden, M. S. et al. Nivolumab plus ipilimumab (NIVO + IPI) vs gemcitabine-carboplatin (gem-carbo) chemotherapy for previously untreated unresectable or metastatic urothelial carcinoma (mUC): Final results for cisplatin-ineligible patients from the checkmate 901 trial [abstract]. J. Clin. Oncol. 43, 4500 (2025).
Powles, T. et al. Pembrolizumab alone or combined with chemotherapy versus chemotherapy as first-line therapy for advanced urothelial carcinoma (KEYNOTE-361): a randomised, open-label, phase 3 trial. Lancet Oncol. 22, 931–945 (2021).
Apolo, A. B. et al. Adjuvant pembrolizumab versus observation in muscle-invasive urothelial carcinoma. N. Engl. J. Med. https://doi.org/10.1056/NEJMoa2401726 (2024).
Riaz, N. et al. Tumor and microenvironment evolution during immunotherapy with nivolumab. Cell 171, 934–949.e16 (2017).
Jardim, D. L., Goodman, A., de Melo Gagliato, D. & Kurzrock, R. The challenges of tumor mutational burden as an immunotherapy biomarker. Cancer Cell 39, 154–173 (2021).
Necchi, A. et al. Pembrolizumab as neoadjuvant therapy before radical cystectomy in patients with muscle-invasive urothelial bladder carcinoma (PURE-01): an open-label, single-arm, phase II study. J. Clin. Oncol. 36, 3353–3360 (2018).
Szabados, B. et al. Final results of neoadjuvant atezolizumab in cisplatin-ineligible patients with muscle-invasive urothelial cancer of the bladder. Eur. Urol. 82, 212–222 (2022).
Bandini, M. et al. Does the administration of preoperative pembrolizumab lead to sustained remission post-cystectomy? First survival outcomes from the PURE-01 study. Ann. Oncol. 31, 1755–1763 (2020).
Boll, L. M. et al. Predicting immunotherapy response of advanced bladder cancer through a meta-analysis of six independent cohorts. Nat. Commun. 16, 1213 (2025).
Mullane, S. A. et al. Correlation of APOBEC mRNA expression with overall survival and PD-L1 expression in urothelial carcinoma. Sci. Rep. 6, 27702 (2016).
Middlebrooks, C. D. et al. Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors. Nat. Genet. 48, 1330–1338 (2016).
Glaser, A. P. et al. APOBEC-mediated mutagenesis in urothelial carcinoma is associated with improved survival, mutations in DNA damage response genes, and immune response. Oncotarget 9, 4537–4548 (2017).
Zhang, C. et al. APOBEC3B and CD274 as combined biomarkers for predicting response to immunotherapy in urothelial carcinoma of the bladder. J. Oncol. 2022, 6042334 (2022).
Bergstrom, E. N. et al. Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA. Nature 602, 510–517 (2022).
Fumet, J. D. et al. Prognostic and predictive role of CD8 and PD-L1 determination in lung tumor tissue of patients under anti-PD-1 therapy. Br. J. Cancer 119, 950–960 (2018).
Hurkmans, D. P. et al. Granzyme B is correlated with clinical outcome after PD-1 blockade in patients with stage IV non-small-cell lung cancer. J. Immunother. Cancer 8, e000586 (2020).
Hamidi, H. et al. Molecular heterogeneity in urothelial carcinoma and determinants of clinical benefit to PD-L1 blockade. Cancer Cell 42, 2098–2112.e4 (2024).
Mariathasan, S. et al. TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells. Nature 554, 544–548 (2018).
Ciardiello, D., Elez, E., Tabernero, J. & Seoane, J. Clinical development of therapies targeting TGFβ: current knowledge and future perspectives. Ann. Oncol. 31, 1336–1349 (2020).
Grivas, P. et al. A phase Ib single-arm trial of bintrafusp alfa (BA) for pretreated, locally advanced/unresectable or metastatic (advanced) urothelial cancer (aUC) [abstract 2374P]. Ann. Oncol. 34, S1209–S1210 (2023).
Kamoun, A. et al. A consensus molecular classification of muscle-invasive bladder cancer. Eur. Urol. 77, 420–433 (2020).
Weinstein, J. N. et al. Comprehensive molecular characterization of urothelial bladder carcinoma. Nature 507, 315–322 (2014).
Damrauer, J. S. et al. Collaborative study from the Bladder Cancer Advocacy Network for the genomic analysis of metastatic urothelial cancer. Nat. Commun. 13, 6658 (2022).
Grivas, P. et al. Validation of a neuroendocrine-like classifier confirms poor outcomes in patients with bladder cancer treated with cisplatin-based neoadjuvant chemotherapy. Urol. Oncol. 38, 262–268 (2020).
Philip, E. J. et al. Efficacy of immune checkpoint inhibitors (ICIs) in rare histological variants of bladder cancer [abstract]. J. Clin. Oncol. 38, 502 (2020).
Griffin, J. et al. Verification of molecular subtyping of bladder cancer in the GUSTO clinical trial. J. Pathol. Clin. Res. 10, e12363 (2024).
Sarfaty, M. et al. Novel genetic subtypes of urothelial carcinoma with differential outcomes on immune checkpoint blockade. J. Clin. Oncol. 41, 3225–3235 (2023).
Rosenberg, J. E. et al. Atezolizumab monotherapy for metastatic urothelial carcinoma: final analysis from the phase II IMvigor210 trial. ESMO Open. 9, 103972 (2024).
Bannier, P. A. et al. AI allows pre-screening of FGFR3 mutational status using routine histology slides of muscle-invasive bladder cancer. Nat. Commun. 15, 10914 (2024).
Schmauch, B. et al. A deep learning model to predict RNA-Seq expression of tumours from whole slide images. Nat. Commun. 11, 3877 (2020).
Sakatani, T. et al. IFN-gamma expression in the tumor microenvironment and CD8-positive tumor-infiltrating lymphocytes as prognostic markers in urothelial cancer patients receiving pembrolizumab. Cancers 14, 263 (2022).
Gil-Jimenez, A. et al. Spatial relationships in the urothelial and head and neck tumor microenvironment predict response to combination immune checkpoint inhibitors. Nat. Commun. 15, 2538 (2024).
Gunjur, A. et al. A gut microbial signature for combination immune checkpoint blockade across cancer types. Nat. Med. 30, 797–809 (2024).
Annakib, S. et al. Gut microbiota as a biomarker for the efficacy of pembrolizumab in patients with advanced urothelial carcinoma treated in a prospective multicenter study [abstract]. J. Clin. Oncol. 43, 825 (2025).
Keller, L. & Pantel, K. Unravelling tumour heterogeneity by single-cell profiling of circulating tumour cells. Nat. Rev. Cancer 19, 553–567 (2019).
Dagogo-Jack, I. & Shaw, A. T. Tumour heterogeneity and resistance to cancer therapies. Nat. Rev. Clin. Oncol. 15, 81–94 (2018).
Martincorena, I. & Campbell, P. J. Somatic mutation in cancer and normal cells. Science 349, 1483–1489 (2015).
Christensen, E. et al. Early detection of metastatic relapse and monitoring of therapeutic efficacy by ultra-deep sequencing of plasma cell-free dna in patients with urothelial bladder carcinoma. J. Clin. Oncol. 37, 1547–1557 (2019).
Kapriniotis, K., Tzelves, L., Lazarou, L., Mitsogianni, M. & Mitsogiannis, I. Circulating tumour DNA and its prognostic role in management of muscle invasive bladder cancer: a narrative review of the literature. Biomedicines 12, 921 (2024).
van Dorp, J. et al. High- or low-dose preoperative ipilimumab plus nivolumab in stage III urothelial cancer: the phase 1B NABUCCO trial. Nat. Med. 29, 588–592 (2023).
Powles, T. et al. Circulating tumor DNA (ctDNA) in patients with muscle-invasive bladder cancer (MIBC) who received perioperative durvalumab (D) in NIAGARA [abstract]. J. Clin. Oncol. 43, 4503 (2025).
Powles, T. et al. ctDNA guiding adjuvant immunotherapy in urothelial carcinoma. Nature 595, 432–437 (2021).
Jackson-Spence, F. et al. IMvigor011: a study of adjuvant atezolizumab in patients with high-risk MIBC who are ctDNA+ post-surgery. Future Oncol. 19, 509–515 (2023).
Bjerggaard Jensen, J. et al. Identification of bladder cancer patients that could benefit from early post-cystectomy immunotherapy based on serial circulating tumour DNA (ctDNA) testing: preliminary results from the TOMBOLA trial [astract 1960O]. Ann. Oncol. 35, S1133 (2024).
Dana-Farber Cancer Institute. MODERN: an integrated phase 2/3 and phase 3 trial of MRD-based optimization of ADjuvant ThErapy in URothelial CaNcer. Dana-Farber Cancer Institute https://www.dana-farber.org/clinical-trials/24-138 (2025).
Powles, T. et al. ctDNA-guided adjuvant atezolizumab in muscle-invasive bladder cancer. N. Engl. J. Med. https://doi.org/10.1056/NEJMoa2511885 (2025).
Meza, L., Salgia, N. J., Patel, K. C. & Pal, S. K. Learning from BISCAY: the future of biomarker-based trial design in bladder cancer. Cancer Cell 39, 910–912 (2021).
Dyrskjøt, L. et al. Utility of ctDNA in predicting outcome and pathological complete response in patients with bladder cancer as a guide for selective bladder preservation strategies [abstract]. J. Clin. Oncol. 41, 563 (2023).
Lindskrog, S. V. & Dyrskjøt, L. Towards circulating tumor DNA-guided treatment of muscle-invasive bladder cancer. Transl. Androl. Urol. 13, 1056–1060 (2024).
Epstein, I. et al. Correlation of circulating tumor DNA (ctDNA) dynamics with clinical response in muscle-invasive bladder cancer (MIBC) patients undergoing trimodality therapy (TMT) [abstract 3245]. Int. J. Radiat. Oncol. Biol. Phys. 120, e564–e565 (2024).
Epstein, I. B. et al. Correlation of circulating tumor DNA (ctDNA) dynamics with clinical response in muscle-invasive bladder cancer (MIBC) patients (pts) undergoing trimodality therapy (TMT) [abstract]. J. Clin. Oncol. 43, 4602 (2025).
Iyer, G. et al. A phase II study of gemcitabine plus cisplatin chemotherapy in patients with muscle-invasive bladder cancer with bladder preservation for those patients whose tumors harbor deleterious DNA damage response (DDR) gene alterations (Alliance A031701) [abstract]. J. Clin. Oncol. 40, TPS4615 (2022).
Geynisman, D. M. et al. Phase II trial of risk-enabled therapy after neoadjuvant chemotherapy for muscle-invasive bladder cancer (RETAIN 1). J. Clin. Oncol. https://doi.org/10.1200/JCO-24-01214 (2024).
Galsky, M. D. et al. Co-primary endpoint analysis of HCRN GU 16-257: phase 2 trial of gemcitabine, cisplatin, plus nivolumab with selective bladder sparing in patients with muscle-invasive bladder cancer (MIBC) [abstract]. J. Clin. Oncol. 41, 447 (2023).
Gao, X. et al. Prognostic and predictive role of circulating tumor DNA detection in patients with muscle invasive bladder cancer: a systematic review and meta-analysis. Cancer Cell Int. 25, 75 (2025).
Cicatiello, A. G. et al. Circulating miRNAs in genitourinary cancer: pioneering advances in early detection and diagnosis. J. Liq. Biopsy 8, 100296 (2025).
St-Laurent, M.-P., Eigl, B. J., Yuan, R., Chang, S. & Black, P. C. NEO-BLAST: Neoadjuvant therapy for bladder cancer followed by active surveillance vs treatment [abstract]. J. Clin. Oncol. 43, TPS890 (2025).
Bahleda, R. et al. Phase I, first-in-human study of futibatinib, a highly selective, irreversible FGFR1–4 inhibitor in patients with advanced solid tumors. Ann. Oncol. 31, 1405–1412 (2020).
Koshkin, V. S. et al. Phase II study of futibatinib plus pembrolizumab in patients (pts) with advanced/metastatic urothelial carcinoma (mUC): Final analysis of efficacy and safety [abstract 1965MO]. Ann. Oncol. 35, S1136–S1137 (2024).
Lyou, Y. et al. Infigratinib in early-line and salvage therapy for FGFR3-altered metastatic urothelial carcinoma. Clin. Genitourin. Cancer 20, 35–42 (2022).
Pal, S. K. et al. Efficacy of BGJ398, a fibroblast growth factor receptor 1-3 inhibitor, in patients with previously treated advanced urothelial carcinoma with FGFR3 alterations. Cancer Discov. 8, 812–821 (2018).
Nogova, L. et al. Evaluation of BGJ398, a fibroblast growth factor receptor 1-3 kinase inhibitor, in patients with advanced solid tumors harboring genetic alterations in fibroblast growth factor receptors: results of a global phase I, dose-escalation and dose-expansion study. J. Clin. Oncol. 35, 157–165 (2017).
Necchi, A. et al. Pemigatinib for metastatic or surgically unresectable urothelial carcinoma with FGF/FGFR genomic alterations: final results from FIGHT-201. Ann. Oncol. 35, 200–210 (2024).
Grivas, P. et al. Evaluating Debio 1347 in patients with FGFR fusion-positive advanced solid tumors from the FUZE multicenter, open-label, phase II basket trial. Clin. Cancer Res. 30, 4572–4583 (2024).
Drakaki, A., Powles, T. B. & Wang, Y. Circulating tumor DNA (ctDNA) clearance with neoadjuvant durvalumab (D) + tremelimumab (T) + enfortumab vedotin (EV) for cisplatin-ineligible muscle-invasive bladder cancer (MIBC) from the safety run-in cohort of the phase III VOLGA trial [abstract 1970MO]. Ann. Oncol. 35, S1140 (2024).
Author information
Authors and Affiliations
Contributions
S.C.M. and T.P. researched data for the article and contributed substantially to discussions of content. All authors wrote the article, and reviewed and/or edited the manuscript before submission.
Corresponding authors
Ethics declarations
Competing interests
The authors declare no competing interests.
Peer review
Peer review information
Nature Reviews Clinical Oncology thanks P. Grivas, Y. Loriot and the other, anonymous, reviewer for their contribution to the peer review of this work.
Additional information
Publisher’s note Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Coca Membribes, S., Szabados, B. & Powles, T. Towards biomarker-driven therapies for urothelial carcinoma. Nat Rev Clin Oncol 23, 92–106 (2026). https://doi.org/10.1038/s41571-025-01095-x
Accepted:
Published:
Version of record:
Issue date:
DOI: https://doi.org/10.1038/s41571-025-01095-x


