Extended Data Fig. 23: Trans-associations found by co-occurrence analyses.

a, Scatter plot for association of gene expression outliers with cancer gene variants. Each dot represents an alteration pair. The x axis shows all COSMIC genes ordered alphabetically and the y axis represents the FDR-adjusted P values (q values) based on Fisher’s exact tests. COSMIC genes with more than five significant associations (FDR < 5%) are coloured in red and labelled. b, Heat map showing the extent of associations between COSMIC gene somatic mutations and expression outliers of all genes. Each row indicates one gene, and the colour intensity shows the significance of trans-association. COSMIC genes labelled to the right are ordered by the number of significant associations. Only the top 10 genes are shown. c, Enrichment map showing the significant (FDR ≤ 0.01) pathways based on the top 100 significant genes associated with B2M alterations. Colour intensity represents enrichment significance, node sizes the number of analysed genes belonging to the given pathway and edge sizes the degree of overlap between two gene sets. Only the top 10 enriched terms are shown.