Extended Data Fig. 3: Read alignments to the graph pangenome and the linear genome.
From: Graph pangenome captures missing heritability and empowers tomato breeding
Visualization of alignments of the same reads in a region by Geneious software79 to compare differences between the graph mapper (Giraffe) (a) and the linear mapper (bwa) (b). An 81-bp deletion can be detected accurately in the graph pangenome, but soft-clipped sequences are detected in the linear genome with five false-positive SNPs (indicated by red stars).
