Extended Data Table 1 Comparison of WES and WGS datasets in coding genes

From: Genotyping, sequencing and analysis of 140,000 adults from Mexico City

  1. Variants were annotated with VEP. Predicted function is defined by canonical transcript consequence in Ensembl v100. Counts are restricted to the same set of 9,950 individuals with both WGS and WES available. All variants passed QC for the respective platform. AAF = Alternate Allele Frequency, IQR = Inter Quartile Range, SD = Standard Deviation.
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